Pairwise Alignments

Query, 489 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase from Agrobacterium fabrum C58

Subject, 487 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella amazonensis SB2B

 Score =  239 bits (610), Expect = 2e-67
 Identities = 185/495 (37%), Positives = 237/495 (47%), Gaps = 41/495 (8%)

Query: 14  LKELL---LSEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYVKDAVAKGAVAVVS 70
           LK+LL       G   +     DSR+   G LF+AV G K DG AY+  A AKGA A + 
Sbjct: 4   LKDLLAPWFHYAGTESVHAPVIDSRQLTAGGLFIAVPGYKTDGRAYLDAAFAKGAAAALV 63

Query: 71  GHAVEADVPVLVVTDPRLYL---------SLAASRFYGKQPDTM--VAVTGTAGKTSVAS 119
            H  + D    V  +P L +         S  A ++Y      +  V VTGT GKTSV+ 
Sbjct: 64  -HTDDPDEHGKVSYEPGLCIAFFQLNRQVSAVARQYYALTRGKLRVVGVTGTNGKTSVSQ 122

Query: 120 FVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELASEGVTHAAMEAS 179
            + Q+    G  AA +GT G    G+      TT D V + A L +   +G    AME S
Sbjct: 123 LIAQLTELLGDKAAVMGTLGNGLWGQLQDVGNTTADAVRVMADLYDFEHQGAKVCAMEVS 182

Query: 180 SHGLDQRRLDGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADD 239
           SHGL Q R++ V    A FTNL RDH+DYH  +++Y AAK RLF       +  VI  DD
Sbjct: 183 SHGLVQGRVEAVPFEVAVFTNLSRDHLDYHGDMDNYAAAKRRLF--AFGSLSARVINLDD 240

Query: 240 P----WSDKAIGAAREAGLEVRTVGRNGQYLTLKRVE--HFRHKQM-IEVHHDGVIFEVD 292
                W D   G     G         G      R E  HF H      +   G    ++
Sbjct: 241 KVGEQWFD---GMGCATGFSCL-----GHAKADWRFENAHFHHAGFSANLVWPGGQKPLE 292

Query: 293 IPLAGDFQVANALVAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAYVDYA 352
             L G F ++N L A       G      + A  KL    GR+E   + K+G    VDYA
Sbjct: 293 CRLLGAFNLSNLLAALCAMAQLGYQVPDLVAAAAKLEAVPGRMECFPR-KDGVSLVVDYA 351

Query: 353 HKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSE 412
           H PDA+E  L + R    G +  VFGCGGDRDKGKRP+M E A   +D +++T DN RSE
Sbjct: 352 HTPDAIEQALKAARHHCEGALWIVFGCGGDRDKGKRPLMAEAAEAFADCLVLTSDNARSE 411

Query: 413 DAATIRSEVMA---AAAGALEIGDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIVGSVTL 469
           D A I  ++ A   A   AL + DR  AIRHAVSM   GD +++AGKGHE  Q +  V  
Sbjct: 412 DPAVILEDMKAGLDAPERALCMVDRVAAIRHAVSMAKPGDLILLAGKGHETYQEIAGV-- 469

Query: 470 PFSDHEQVRSALAEL 484
               HE    ALA +
Sbjct: 470 ---KHEYDERALARV 481