Pairwise Alignments

Query, 489 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase from Agrobacterium fabrum C58

Subject, 488 a.a., UDP-N-acetylmuramyl-tripeptide synthetase (RefSeq) from Shewanella loihica PV-4

 Score =  259 bits (661), Expect = 2e-73
 Identities = 183/481 (38%), Positives = 253/481 (52%), Gaps = 32/481 (6%)

Query: 23  GAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYVKDAVAKGAVAVVSGHAVEADVP--- 79
           G   +  +T DSR+   GS+FVAV G + DG  YV  A+++GAVA +    +  D P   
Sbjct: 15  GGESLSHLTLDSREIGQGSVFVAVPGHRVDGRDYVDTALSQGAVAAL----IHTDDPAEH 70

Query: 80  --VLVVTDPRLY-------LSLAASRFY--GKQPDTMVAVTGTAGKTSVASFVRQIWAFA 128
             V      R+Y       LS  AS+ Y  G+    ++ VTGT GKTSV   + Q+    
Sbjct: 71  GKVSQDNGLRIYFFQLQRQLSALASQLYVLGRDRIKLIGVTGTNGKTSVTQLIAQLSDGL 130

Query: 129 GHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQRRL 188
           G  AA +GT G    G+      TT DP+T+   L +   +G    AME SSHGL Q R+
Sbjct: 131 GKPAAVMGTLGNGLWGQLVDSGNTTADPITVMRQLEDFDRQGTAVCAMEVSSHGLVQGRV 190

Query: 189 DGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIGA 248
           D V    A FTNL RDH+DYH +++ Y AAK RLF       +  +I  DDP   + I  
Sbjct: 191 DAVPFDVAVFTNLSRDHLDYHGSMDAYGAAKQRLFR--FSSLSHGLINLDDPVGRQWIQD 248

Query: 249 AREAGLEVRTV-GRNGQYLTLKRVEHFRHKQMIE---VHHDGVIFEVDIPLAGDFQVANA 304
            R  GL   ++ G+ G  +  K V+  +H Q +    V  +G   ++D PL G F ++N 
Sbjct: 249 KRCKGLVGFSIQGQEGAAIYTKEVK--QHSQGVSATLVWPEGEA-KIDSPLLGIFNLSNL 305

Query: 305 LVAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAYVDYAHKPDALENVLTS 364
           + A G    +G   A  L  +  L   AGR+E    T+ G    VDYAH PDA+E  L +
Sbjct: 306 VAALGALYLSGYAMAQLLTQVSSLKPVAGRMERF-TTQEGVTLVVDYAHTPDAIEQALRA 364

Query: 365 VRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSEDAATIRSEVMAA 424
           +R    G++  VFGCGGDRDKGKRP+M   A   +D V+VT DN RSED   I  +V+A 
Sbjct: 365 LRGHCRGKLWCVFGCGGDRDKGKRPLMARAAEENADCVMVTSDNARSEDPMAIIQDVLAG 424

Query: 425 AAG---ALEIGDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIVGSVTLPFSDHEQVRSAL 481
                 AL   DR +AIR  V++ S+GD +++AGKGHE  Q +    L + D   + +A+
Sbjct: 425 LNKPQIALTQVDRQQAIREVVTLASNGDLILLAGKGHETYQEIAGKRLDY-DERALAAAI 483

Query: 482 A 482
           A
Sbjct: 484 A 484