Pairwise Alignments

Query, 489 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase from Agrobacterium fabrum C58

Subject, 494 a.a., UDP-N-acetylmuramyl-tripeptide synthetase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  293 bits (749), Expect = 1e-83
 Identities = 182/474 (38%), Positives = 252/474 (53%), Gaps = 24/474 (5%)

Query: 30  ITADSRKAAPGSLFVAVAGTKA------DGAAYVKDAVAKGAVAVVS----GHAVEADVP 79
           I  DSRK   G +FVAV G  A      DGA ++  A A GA AVV       A  AD P
Sbjct: 20  IRTDSRKVGRGDVFVAVPGVAANGGAGVDGADFIVKAWAAGAGAVVCLPARVEAALADAP 79

Query: 80  ----VLVVTDPRLYLSLAASRFYGKQ--PDTMVAVTGTAGKTSVASFVRQIWAFAGHAAA 133
               V    DPR+ + L     YG    P  +VAVTGT GKT++   +  +++  G  A 
Sbjct: 80  EGAVVAAHDDPRVAIGLLGQARYGTDALPFPVVAVTGTNGKTTITYLLDHVFSALGRRAG 139

Query: 134 QIGTTGVIAPGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQRRLDGVHL 193
            +GT     PG      LTTPD +  HA+L  +   GV  A ME SSH LDQRR+ G+  
Sbjct: 140 VLGTVSYRWPGFAMDAPLTTPDCIETHAMLGRMRDAGVDVALMEVSSHALDQRRVAGIRF 199

Query: 194 SAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIGAAREA- 252
           + A  TNL +DH+DYH  +E Y AAK RLF  L +      + ADD W  + +G    A 
Sbjct: 200 AGAILTNLTQDHLDYHGDMEHYYAAKARLFTELPDADKACAVNADDAWGRRLLGEVPHAI 259

Query: 253 --GLEVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVIFEVDIPLAGDFQVANALVAAGL 310
             GL+        ++L  + V +      + + ++G  +E+   L G    +N L    +
Sbjct: 260 GFGLDAGNAVSGRRFLHGEMVRNATSGLTLRMTYEGRQWELSSHLVGAHNASNLLAVQAV 319

Query: 311 AMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAYVDYAHKPDALENVLTSVRPFTS 370
            +  G+ A     +L    G  GRLE +   + G   +VDYAH PDALENVL ++R    
Sbjct: 320 CLGMGL-APQDFASLAGFTGVPGRLERIVNPR-GLDIFVDYAHTPDALENVLRALRAVGF 377

Query: 371 GRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSEDAATIRSEVMAAAAGALE 430
            RI+TVFGCGG+RD+ KRP+MG+   R +D+ ++T DNPR ED   I ++V+   AGA +
Sbjct: 378 SRIVTVFGCGGNRDRTKRPLMGQAVARHADVAVLTSDNPRHEDPEAIMADVLPGLAGARK 437

Query: 431 I---GDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIVGSVTLPFSDHEQVRSAL 481
           +    DRA AI  A+++L  GD L+VAGKGHE  Q +G   +P+SD + +R  L
Sbjct: 438 VVSDADRARAIGKALALLQPGDVLLVAGKGHESYQQIGDRKVPYSDQQVIREIL 491