Pairwise Alignments

Query, 489 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase from Agrobacterium fabrum C58

Subject, 491 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (582), Expect = 3e-64
 Identities = 171/475 (36%), Positives = 234/475 (49%), Gaps = 37/475 (7%)

Query: 30  ITADSRKAAPGSLFVAVAGTKADGAAYVKDAVAKGAVAVV--------SGHAVEAD--VP 79
           +T DSR    G +F+A+ G K DG  ++  A+A+GA AV+         G  + A+  V 
Sbjct: 22  LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDNPQEQGKVIVAEQGVQ 81

Query: 80  VLVVTDPRLYLSLAASRFYGKQPDTM--VAVTGTAGKTSVASFVRQIWAFAGHAAAQIGT 137
           +      +   ++AA R+   Q   M  V +TGT GKTS +    Q+       AA +GT
Sbjct: 82  IYFYELAKHVSAVAAVRYPVIQGHAMGIVGITGTNGKTSTSQLCAQLVTLLSGKAAVMGT 141

Query: 138 TGVIAPGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQRRLDGVHLSAAG 197
            G    G       TT D +TL   L E A++GV   AME SSHGL Q R+D V    A 
Sbjct: 142 LGNGLWGELVDSGNTTADAITLMRQLHEFANKGVNTCAMEVSSHGLVQGRVDAVPFDVAV 201

Query: 198 FTNLGRDHMDYHPTIEDYMAAKMRLF--DTLMEKGAPAVIFADDPWSDKAIGAAREAGLE 255
           FTNL RDH+DYH  +E+Y AAK  LF  D+L       ++  DDP     IG A  A L+
Sbjct: 202 FTNLTRDHLDYHGDMENYAAAKQMLFRFDSLRH----GLLNLDDP-----IGGAWLAELK 252

Query: 256 VRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVIF-------EVDI--PLAGDFQVANALV 306
                  G  +   +   F  K  +  +  GV         E+DI  PL G F ++N L 
Sbjct: 253 NVPAKIWGFSIEAHKAAAFYTKN-VRFNDQGVQATLVWPEGEIDISSPLLGAFNLSNLLA 311

Query: 307 AAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAYVDYAHKPDALENVLTSVR 366
           A       G+        +  LV  AGR+E      N  L  VDYAH PDA+E  L ++R
Sbjct: 312 ALSALYLQGMDMRALAAKVPYLVPVAGRMERFTTADNITLV-VDYAHTPDAIEQALNALR 370

Query: 367 PFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSEDAATIRSEVMAAAA 426
              +G +  VFGCGGDRDKGKRP+MG+ A + +D ++VT DN RSED   I ++++    
Sbjct: 371 RHCAGVLWCVFGCGGDRDKGKRPLMGQAAEQFADRIMVTSDNARSEDPNQIITDIIQGLT 430

Query: 427 ---GALEIGDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIVGSVTLPFSDHEQVR 478
               AL   DR  AI+  V+    GD +++AGKGHE  Q    V   + +    R
Sbjct: 431 HPERALTEVDRVAAIKQVVAQAKSGDVILLAGKGHETYQEAAGVRHDYDERALAR 485