Pairwise Alignments

Query, 489 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase from Agrobacterium fabrum C58

Subject, 508 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase from Herbaspirillum seropedicae SmR1

 Score =  244 bits (622), Expect = 7e-69
 Identities = 186/485 (38%), Positives = 256/485 (52%), Gaps = 41/485 (8%)

Query: 30  ITADSRKAAPGSLFVAVAGTKADGAAYVKDAVAKGAVAVVSGHA-----VEADVPVLVVT 84
           +T+DSR+ APG +F A  G  ADG +Y+ DAV +GA AVV   A      + DVP L VT
Sbjct: 24  LTSDSRRVAPGDVFFAYVGD-ADGRSYIADAVERGAAAVVYEAAGFTWPAQIDVPHLAVT 82

Query: 85  DPRLYLSLAASRFYGKQPDT---MVAVTGTAGKTSVASFVR-QIWAFAGHAAAQ-IGTTG 139
           D + +    A+ +YG QPD     VAVTGT GKTS A ++   +   AG + A  IGT G
Sbjct: 83  DLKSHAGEIAASWYG-QPDQGMLTVAVTGTNGKTSCAYWLGIALSRLAGASTAGVIGTLG 141

Query: 140 VIA-----PGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQRRLDGVHLS 194
           V +     P   D    TTPD V L   L +LA   V   A+EASS GL Q R++G+H+ 
Sbjct: 142 VGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLAQGRVGALAIEASSIGLAQGRMNGMHVD 201

Query: 195 AAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIGAAREAGL 254
            A  TN  RDH+D+H  ++ Y  AK +LF     K   AV+  DD    + +    E   
Sbjct: 202 VALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLK--HAVVNLDDDMGQRLLPLLAER-- 257

Query: 255 EVRTVG---RNGQYLTLKRVEHFRHKQMIEVHHDGVIFEVDIP---------LAGDFQVA 302
           +V  +G    + Q      V   R  Q +   H G +F VD P         L G F V+
Sbjct: 258 KVPVIGYAIADEQGGDPHGVPTLRASQ-LRSSHTGTVFHVDSPFGSGQVKTQLVGRFNVS 316

Query: 303 NALVAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAYVDYAHKPDALENVL 362
           N L   G+ ++ GV     + A   L  A GR++  G   +  L  +DYAH PDAL+  L
Sbjct: 317 NVLGIMGVLLTQGVAWDAVVAAAAALSPAPGRMQQFG-GPDVPLIVIDYAHTPDALDKTL 375

Query: 363 TSVRPFTS---GRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSEDAATIRS 419
           +++R   +   G++  VFGCGGDRD GKRP MG++A + +D V++T DNPRSED   I  
Sbjct: 376 STLRQLATQRGGQLWCVFGCGGDRDPGKRPQMGQIAEQ-ADQVVLTSDNPRSEDPQAIID 434

Query: 420 EVMAAAAGA--LEIGDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIVGSVTLPFSDHEQV 477
           ++ A  +    + + DRA AI  A+   +  D +++AGKGHE  Q +    LPF D + V
Sbjct: 435 QIRAGMSRVEPVVLPDRAGAILWAIRHATKADVVLLAGKGHESYQEIAGKKLPFLDADHV 494

Query: 478 RSALA 482
             ALA
Sbjct: 495 ALALA 499