Pairwise Alignments

Query, 489 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase from Agrobacterium fabrum C58

Subject, 493 a.a., UDP-N-acetylmuramyl-tripeptide synthetase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  422 bits (1084), Expect = e-122
 Identities = 234/482 (48%), Positives = 297/482 (61%), Gaps = 15/482 (3%)

Query: 19  LSEIGAIEIG----GITADSRKAAPGSLFVAVAGTKADGAAYVKDAVAKGAVAVVS---G 71
           L+E+G  E G    G+  DSR+   G LF  + G++  GA +++ A+  GA A+++   G
Sbjct: 10  LAELGFAERGRPVTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEG 69

Query: 72  HAVE------ADVPVLVVTDPRLYLSLAASRFYGKQPDTMVAVTGTAGKTSVASFVRQIW 125
             +       A+V ++V  DPR   S AA+ +YG QP TMV VTGT GKTSVASF RQ+W
Sbjct: 70  ARIARDVLDGAEVTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLW 129

Query: 126 AFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQ 185
              GHAAA IGTTG+      D  A TTPDP+TLHA LAE+A++G+THAAMEASSHGLDQ
Sbjct: 130 QGLGHAAANIGTTGIEGDFSADL-AHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQ 188

Query: 186 RRLDGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKA 245
           RRLDGV L AAGFTN  +DH+DYH T E Y AAK  LF  ++     AVI  DDP     
Sbjct: 189 RRLDGVRLVAAGFTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADM 248

Query: 246 IGAAREAGLEVRTVGRNGQYLTLKRVEHF-RHKQMIEVHHDGVIFEVDIPLAGDFQVANA 304
           +  A  AG E+ TVG +   +     + F    Q +     GV  +  + L G FQ +N 
Sbjct: 249 MAIAHGAGAELLTVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNV 308

Query: 305 LVAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAYVDYAHKPDALENVLTS 364
           LVA GL M+TG      +  L +L    GR++ V + +NGA  +VDYAH PDAL+  L +
Sbjct: 309 LVAMGLVMATGAQVGDLVPLLPRLATVRGRMQKVARRENGATVFVDYAHTPDALKTALRA 368

Query: 365 VRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSEDAATIRSEVMAA 424
           +RP   GR++ VFG GGDRD GKRP+MG  A   +D+V VTDDNPRSED A IR++V A 
Sbjct: 369 LRPHVLGRLVVVFGAGGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQVRAG 428

Query: 425 AAGALEIGDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIVGSVTLPFSDHEQVRSALAEL 484
              A ++ DRAEAI   V  L  GD L++AGKGHE GQ VG V  PF D EQ   A+A L
Sbjct: 429 CPEATDVPDRAEAILRGVDALEPGDVLLIAGKGHETGQTVGDVVYPFDDAEQASVAVAAL 488

Query: 485 EG 486
           EG
Sbjct: 489 EG 490