Pairwise Alignments

Query, 477 a.a., UDP-MurNAc-pentapeptide synthetase from Agrobacterium fabrum C58

Subject, 460 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  219 bits (557), Expect = 2e-61
 Identities = 143/388 (36%), Positives = 206/388 (53%), Gaps = 22/388 (5%)

Query: 26  ITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFAVANGASLLVVAEAKLPALGRLTVPMI 85
           +  +S DSR +     F A+KGDR DGHD+ + A+ NGA  L+V E +L       +P +
Sbjct: 24  VQALSSDSRKIGPATLFVALKGDRFDGHDFAATAIENGAIALLV-ERELA----FDIPQL 78

Query: 86  VVEDVLAALGKLALAARERTSARIIAVTGSVGKTTTKEMLRQALAPSGRVHAAVASFNNH 145
           +V D   A+G +    R++ +   +A+TGS GKT+ KEM+   L+   +V     +FNN 
Sbjct: 79  IVADCQKAMGAIGAYVRDQVNPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGNFNNE 138

Query: 146 WGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVKMVRPHVAIITTIAPAHLGNFKNIEEI 205
            GVPLTL R+  + ++GVFE+G NH GEI     +VRPHVA++  +  AHL  F +   +
Sbjct: 139 IGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSGLVRPHVALVNNVGSAHLEGFGSQAGV 198

Query: 206 AAAKAEIFEGVEEGGSVILNRDNAQFEQLEEAAQEAGIEHILTFGQHAKADFRLADFEST 265
           A AK+EI+  ++E G+ I+N D+A  + +   A+       L+F Q   A  R  D  +T
Sbjct: 199 AQAKSEIYNHLQEDGTAIINADDAFADVMRVKAKH---YKQLSFSQQEGAAKRQIDVIAT 255

Query: 266 ----TTGSTIWAILN--GETSELHINIPGRHIADNAMAVLGAVAVTGANLDRALEALGTL 319
                +      +LN  GE+ E+ + + GRH   NA+A        G NL    E L  L
Sbjct: 256 GHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNALAAASVCIALGLNLTEIAEGLSQL 315

Query: 320 EAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAAIAVLAETETQGHGRRVAVLGDMLE 379
             VKGR Q   L    G   LID+SYNANP S+ AAIA L E        R  VLGD+ E
Sbjct: 316 TPVKGRMQPTQL----GRVRLIDDSYNANPVSVGAAIAWLKEISE----NRCLVLGDLGE 367

Query: 380 MGEFSAQLHEELAGPLLAAGIEHVWLAG 407
           +G+ +  LH EL       GI+ ++  G
Sbjct: 368 LGDNAPLLHAELGQLARQQGIDALFCTG 395