Pairwise Alignments

Query, 477 a.a., UDP-MurNAc-pentapeptide synthetase from Agrobacterium fabrum C58

Subject, 486 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Herbaspirillum seropedicae SmR1

 Score =  196 bits (499), Expect = 1e-54
 Identities = 155/480 (32%), Positives = 223/480 (46%), Gaps = 30/480 (6%)

Query: 1   MSWLWTVADMIAITAGRPVGNLPTGITGIS---IDSRTVKQGEAFFAIKGDRVDGHDYTS 57
           + WL T     +      V N P G+  ++    DSR VK G  F A++G+R D HD+  
Sbjct: 10  LEWLRTAEAAASAHTVPGVVNAPAGLLALNDVVTDSRAVKPGNVFVALRGERFDAHDFLD 69

Query: 58  FAVANGASLLVVAEAKLPALGRLTVPMIVVEDVLAALGKLALAARERTSARIIAVTGSVG 117
            AVA+  +  VV E   P L    +P IVV D  AALG++A   R +    +I VTGS G
Sbjct: 70  -AVADQGAAAVVVERVPPGLA---LPAIVVPDTRAALGQIAHGWRMQRQIPVIGVTGSNG 125

Query: 118 KTTTKEMLRQALAPSGRVHAAVAS---FNNHWGVPLTLARMPADTEFGVFEIGMNHSGEI 174
           KTT KEM+   LA +      + +   FNN  GVPLTL R+ A  +  V E+GMNH GEI
Sbjct: 126 KTTVKEMIATILAAAFGEEGYLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMGMNHPGEI 185

Query: 175 RPLVKMVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGSVILNRDNAQFEQL 234
             L ++  P + ++      H      +E +A     +   +   G  +   D+  F  L
Sbjct: 186 AVLSRIAAPTLGLVNNAQREHQEFMATVEAVARENGAVIRHLPADGVAVFPADD-DFTPL 244

Query: 235 EEAAQEAGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNG-----ETSELHINIPGR 289
               +EAG   +L+FG  A+AD   A +++T  GST+   + G        ++ +   G 
Sbjct: 245 WR--EEAGARRVLSFGLSAQADVS-ASYQATAFGSTLQVAVKGLAVPPAQFKVELAAVGE 301

Query: 290 HIADNAMAVLGAVAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNANP 349
           H   NA+A        G  ++  +  L +   V GR QR          L+ID++YNANP
Sbjct: 302 HNVRNALAAAACALGAGIAIEAVVRGLESFAPVNGRLQRKEAR---SGALVIDDTYNANP 358

Query: 350 ASMRAAIAVLAETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGEA 409
            S+RAAI VLA       G RV VLGDM E+G+   Q H E+     + GI   +  GE 
Sbjct: 359 DSVRAAIDVLAAIA----GPRVLVLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGEL 414

Query: 410 ---MAALRDALPDSVT-VIWFPTTAELTDFALQWVQPGDALMVKSSLGLGFGKIVAALLD 465
                    A P  V   + F   A L     Q    G  ++VK S  +   ++V  L++
Sbjct: 415 TKHAVTAYGATPQGVAQALHFDDIAALNAAVEQAAPQGATVLVKGSRFMKMERVVQHLVN 474