Pairwise Alignments

Query, 477 a.a., UDP-MurNAc-pentapeptide synthetase from Agrobacterium fabrum C58

Subject, 460 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (RefSeq) from Shewanella sp. ANA-3

 Score =  219 bits (559), Expect = 1e-61
 Identities = 144/388 (37%), Positives = 207/388 (53%), Gaps = 22/388 (5%)

Query: 26  ITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFAVANGASLLVVAEAKLPALGRLTVPMI 85
           I  +S DSR +     F A+KG+R DGHD+ + A+ NGA  L+V E +L       VP +
Sbjct: 24  IQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALLV-ERQLA----FDVPQL 78

Query: 86  VVEDVLAALGKLALAARERTSARIIAVTGSVGKTTTKEMLRQALAPSGRVHAAVASFNNH 145
           +V D   A+G +    R++     +A+TGS GKT+ KEM+   L+   +V     +FNN 
Sbjct: 79  IVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGNFNNE 138

Query: 146 WGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVKMVRPHVAIITTIAPAHLGNFKNIEEI 205
            GVPLTL R+ ++ ++GVFE+G NH GEI     +VRPHVA++  +  AHL  F +   +
Sbjct: 139 IGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSSLVRPHVALVNNVGSAHLEGFGSQAGV 198

Query: 206 AAAKAEIFEGVEEGGSVILNRDNAQFEQLEEAAQEAGIEHILTFGQHAKADFRLADFEST 265
           A AK+EI+  ++ GG+ I+N D+A  + +   A++      L+F Q   A  R  D  +T
Sbjct: 199 AQAKSEIYNHLQPGGTAIINADDAFADVMRVKAKQ---YKQLSFSQQEGAAKRQIDVIAT 255

Query: 266 ----TTGSTIWAILN--GETSELHINIPGRHIADNAMAVLGAVAVTGANLDRALEALGTL 319
                +      ILN  GE+ E+ + + GRH   NA+A        G +L    E L  L
Sbjct: 256 GHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNALAAASVCIALGLSLKEIAEGLSQL 315

Query: 320 EAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAAIAVLAETETQGHGRRVAVLGDMLE 379
             VKGR Q   L    G   LID+SYNANP S+ AAIA L E        R  VLGD+ E
Sbjct: 316 TPVKGRMQPTQL----GRVRLIDDSYNANPVSVGAAIAWLKEISE----NRCLVLGDLGE 367

Query: 380 MGEFSAQLHEELAGPLLAAGIEHVWLAG 407
           +G+ +  LH EL       GI+ ++  G
Sbjct: 368 LGDNAPLLHAELGQLAKQQGIDALFCTG 395