Pairwise Alignments

Query, 469 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase from Agrobacterium fabrum C58

Subject, 439 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  199 bits (505), Expect = 2e-55
 Identities = 148/456 (32%), Positives = 221/456 (48%), Gaps = 37/456 (8%)

Query: 14  LFGLGGSGLVTARALVAGGAAVVAFDDNPDSV-AKAQAEGIATADLHTIDWS-----SFS 67
           + GLG +GL   R L   G   +  D       A+  A       L    +        +
Sbjct: 9   VLGLGATGLSVVRYLCGKGITPLVMDSRRQPPGAETLASSFPEVKLIAGGFDCRYLVQAT 68

Query: 68  SFVLAPGVPLTHPKPHWSVDLAKAAGVEVIGDIELFIRERRVHAPDCPFIAITGTNGKST 127
             +++PG+ +  P+   ++D+    G+EVIGD+ELF RE     P C  I ITG+NGK+T
Sbjct: 69  QIIISPGIAMNTPEVRAALDM----GIEVIGDVELFAREIADRKP-C-VIGITGSNGKTT 122

Query: 128 TTALIAHILQSSGRDTQLGGNIGTAVLSLDPPKAQRFYVVECSSYQIDLAPTINPTAGIL 187
            T L+  +L+ +G    +GGNIG   L L    A  F V+E SS+Q++   ++N  A   
Sbjct: 123 VTTLVGEMLREAGIAVAVGGNIGIPALDLLKENADIF-VLELSSFQLETTHSLNCVASTC 181

Query: 188 LNLTPDHLDRHGTMQHYADVKERLVAGSGTAIVGVDDSHSTLIADRIERA-GVKVERISK 246
           LN+T DH+DR+  M  Y   K RL   S + I   DD+ +       + + G+      +
Sbjct: 182 LNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQNSFGLAPPEGDE 241

Query: 247 RNVVSEGLYAEGSQILRAHGGTSSLLVDLDGIQTLRGSHNAQNAAAAIAACLAVGVSEEE 306
             +    +Y   S+I+         + ++    +L GSHN  N  AA+A   AVGV ++ 
Sbjct: 242 WGICDSKIYHGHSEIMP--------ITEV----SLIGSHNHANLLAAMALVYAVGVDKQV 289

Query: 307 IRAGLKSFPGLKHRMQPVGRRGNVTFVNDSKATNADAAAPALSSFD----RIYWIAGGLP 362
           +    ++F GL HR + VG +G VT+VNDSKATN  A   AL         I  IAGG  
Sbjct: 290 MANVARTFTGLSHRCEVVGVKGGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDG 349

Query: 363 KAGGITSLSPLFPRIAKAYLIGEAAAEFAATLGEAVPYEISGTLDKAVQHAAADAEKDAT 422
           K    + L     ++     +G    + AA    A+  +       ++  A A A + AT
Sbjct: 350 KGADFSPLEEPLTKVTHLITLGRDGNKIAALKEGAIKVD-------SMAAAVAKAAQLAT 402

Query: 423 AGNVVMLSPACASFDQYKNFEIRGDSFVAQVAALEG 458
           +G++V+LSPACAS D Y NF  RGD F +QV  L+G
Sbjct: 403 SGDIVLLSPACASLDMYSNFMARGDDFRSQVEQLDG 438