Pairwise Alignments

Query, 469 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase from Agrobacterium fabrum C58

Subject, 710 a.a., UDP-N-acetylmuramoylalanine ligase from Herbaspirillum seropedicae SmR1

 Score =  129 bits (324), Expect = 3e-34
 Identities = 102/323 (31%), Positives = 156/323 (48%), Gaps = 36/323 (11%)

Query: 165 YVVECSSYQIDLAPTINPTAGILLNLTPDHLDRHGTMQHYADVKERL------------- 211
           +V+E SS+Q+    ++   A  +LNLT DHLD HG+M+HYA  K R+             
Sbjct: 384 WVLELSSFQLHTTHSLQADAATVLNLTQDHLDWHGSMEHYAADKARIFGQHTVRVLNRDD 443

Query: 212 -------VAGSGTAIVGVDDSHSTLIADRIERAGV---KVERISKRNVVSEGLYAEGSQI 261
                   AGS  +  G+D+  +      +   G+       + + + V EG      + 
Sbjct: 444 ALVMQMAAAGSALSTFGLDEPTAPNSFGLVNDNGMLWLANAFVHEDDEVPEGKRRRKQKD 503

Query: 262 LRAHGGTSSLLVDLDGIQTLRGSHNAQNAAAAIAACLAVGVSEEEIRAGLKSFPGLKHRM 321
           +     T   L+  D ++ +RG+HNA NA AA+A C A+ +    +  GL+ + G  HR+
Sbjct: 504 MLPPPVTLKRLMPADALK-IRGAHNAMNALAALALCRAIDLPMAPLLHGLRDYTGEPHRV 562

Query: 322 QPVGRRGNVTFVNDSKATNADAAAPALSSF------DRIYWIAGGLPKAGGITSLSPLFP 375
           + VG    V + +DSK TN  A   AL+        +RI  IAGG  K    + L     
Sbjct: 563 ELVGVIQEVDYYDDSKGTNVGATVAALNGLGLGGRPNRIVLIAGGDGKGQDFSPLDLPVQ 622

Query: 376 RIAKA-YLIGEAAAEFAATLGEA-VPYEISGTLDKAVQHAAADAEKDATAGNVVMLSPAC 433
           + A+A  LIG  A    A L ++ V      +L+ AV+ A     + ATAG++V+LSPAC
Sbjct: 623 KYARAVLLIGRDAPAIRAALADSGVELIDCASLEAAVEKAG----EIATAGDIVLLSPAC 678

Query: 434 ASFDQYKNFEIRGDSFVAQVAAL 456
           AS D ++N+  R + FV  V  L
Sbjct: 679 ASLDMFRNYAHRAEVFVDAVREL 701



 Score = 60.5 bits (145), Expect = 2e-13
 Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 23/169 (13%)

Query: 6   SFRGKKVALFGLGGSGLVTARALVAGGAAVVAFDDNPDSVAKAQAEGIATADLHTIDWSS 65
           ++ GK V + GLG SGL  AR LV  GA+V   D   ++   A AE +A       +  +
Sbjct: 2   NYSGKHVLVLGLGESGLAMARWLVYCGASVRVADTRGEA---ALAERLAALRADAPEAQA 58

Query: 66  FSSFVLAP----GVPLTHPKPHWSVDLAKAAGVEVI--------GDIELF------IRER 107
                L+P    GV      P  + +   A  +  I        G+IELF      +RE 
Sbjct: 59  VLGQPLSPALLEGVDFVAVSPGLAPEGELAPLMPAIAERSLPLWGEIELFAQALVALREE 118

Query: 108 RVHAPDCPFIAITGTNGKSTTTALIAHILQSSGRDTQLGGNIGTAVLSL 156
            ++ P    +AITGTNGK+T T L   + Q +G   Q+ GNI  A L +
Sbjct: 119 TLYQPKV--LAITGTNGKTTVTRLTGLLCQRAGLSVQVAGNISPAALDV 165