Pairwise Alignments

Query, 308 a.a., D-alanylalanine synthetase from Agrobacterium fabrum C58

Subject, 321 a.a., D-alanine--D-alanine ligase (EC 6.3.2.4) from Pseudomonas fluorescens FW300-N2E2

 Score =  188 bits (478), Expect = 1e-52
 Identities = 128/300 (42%), Positives = 169/300 (56%), Gaps = 21/300 (7%)

Query: 6   VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDELRPDVAFNALHG 65
           VAVL GG S+ER VSL SGNA   AL+  G     +DVG D    L   + D AF  LHG
Sbjct: 20  VAVLFGGKSAEREVSLKSGNAVLQALQSAGVDAFGIDVGDDFLQRLLNEKIDRAFIILHG 79

Query: 66  PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVM-NRFD-F 123
             GEDG++QG+LE L IPYT SG+LASALAMDK + K+V  + GIP     V+ +  D  
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHAVLASEADCI 139

Query: 124 TSEHPLQPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEW----PFGNQVMVERYIHG 179
           ++   L  P +VKP  EGSS G+  V    +  P++  ++ W     + +QV+VE++I G
Sbjct: 140 SAATELGFPLIVKPAHEGSSIGMAKV----NSLPEL--TAAWKDASSYDSQVLVEQWISG 193

Query: 180 RELTCGVLDGEALGVTEVVPLG--HNFYDYDAKYAAGGSKHVIPAGISPKIYQKIQTLAV 237
            E T   L  + L     + LG  H FYDYDAKY A  +++ IP G+     +++  L  
Sbjct: 194 PEFTIATLRDQVL---PPIALGTPHTFYDYDAKYVANDTQYRIPCGLDAAKEKELMDLTA 250

Query: 238 MAHQAIGCRGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLV 297
            A +A+G  G  R+D   D     DG+  +LEVNT PGMT  SLVP  A  AG  F  LV
Sbjct: 251 KACEALGIAGWGRADVMQD----ADGQFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLV 306