Pairwise Alignments

Query, 308 a.a., D-alanylalanine synthetase from Agrobacterium fabrum C58

Subject, 334 a.a., D-alanyl-alanine synthetase A (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (250), Expect = 4e-26
 Identities = 96/327 (29%), Positives = 142/327 (43%), Gaps = 39/327 (11%)

Query: 5   HVAVLLGGFSSERPVSLSSGNACALALEGEGY-KVTRVDVG------------------R 45
           ++ +L GG   E  +SL S N    +L    +  V RV++                   R
Sbjct: 5   NLLLLCGGGGDEHAISLLSANYFETSLAKLPHLNVLRVELDAKGQYQSKSGERCELTNRR 64

Query: 46  DVAAVLDELRP---DVAFNALHGPFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAK 102
           ++    + L P   D     +HG  GE G IQ   E + +PY       S    +K  AK
Sbjct: 65  EIRFEDESLAPWPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDAEGSRNCFNKITAK 124

Query: 103 KVAAAAGIPVAGERVMNRFD------FTSEHPLQPPYVVKPVREGSSFGVVIVKEDQSHP 156
              +A GIP      +N+ D       T          VK   +GSS G   V +D +  
Sbjct: 125 MWFSALGIPNTPYLFLNQLDEQAIAQTTDALAKWGSVFVKAASQGSSVGCYRV-DDAAQI 183

Query: 157 PQILTSSEWPFGNQVMVERYIHGRELTCGVLD--GEALGVT--EVVPLGHNFYDYDAKYA 212
           P IL  + + +   V+VE+ I  REL   V    GE +     EV+  G  FY YD KYA
Sbjct: 184 PAILADA-FHYSPYVVVEKTIQARELEVAVYQYRGETVATLPGEVICAGGTFYTYDEKYA 242

Query: 213 AGGSKHV-IPAGISPKIYQKIQTLAVMAHQAIGCRGVSRSDFRYDDRFSEDGEVIWLEVN 271
           A       + A +S +I Q+I+  AV     +  R +SR DF      + +GE++  E+N
Sbjct: 243 ADSKATTKVVAEVSDEIAQQIRAYAVKVFDGMKLRHLSRIDFF----LTPEGEILLNEIN 298

Query: 272 TQPGMTPTSLVPEMAAHAGRSFGDLVS 298
           T PG+TP S+ P+M A+ G  F   ++
Sbjct: 299 TFPGLTPISMFPKMLANHGDDFSQYLN 325