Pairwise Alignments

Query, 288 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

 Score = 89.7 bits (221), Expect = 6e-23
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)

Query: 12  TMRGIAVSLMLVGASVVVTACQSDPDIDITKLGVETDPPDVLYKQGLANMNAGNMTEASR 71
           T+ G+    +L G       C S PD+      V   PP  LY +    + +G    A  
Sbjct: 5   TLSGLLALSLLFG-------CSSSPDV------VPDVPPSQLYSEAQTALQSGTWLTAIE 51

Query: 72  KFEAIDKQYPFTEWGQKALVMQTFIATRTNKNDVAITSGSRFLRQYPRSKDAAYVQYMIG 131
           K EA+D +YPF  + ++  +   +   + +   + + +  RF R  P  +   +V YM G
Sbjct: 52  KLEALDSRYPFGAYSEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRG 111

Query: 132 LAYSKQ----------ISDVTQDQRAAQRTIEAMNKVVNDYPSSEYVADAQAKIRFARDQ 181
           L +  Q          I    +D    +       K++  YP+S Y  DAQ ++   +++
Sbjct: 112 LTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNR 171

Query: 182 LAGREMQVGRYYLERKEYLAAVSRFRIVVEQYQNTNQIEEALARLTEAYYAMGLVDEAQT 241
           LA  ++    +YL R+ ++AA++R + + + Y +T    ++L    EAY  +GL D  + 
Sbjct: 172 LAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIER 231

Query: 242 AAAVLGNN 249
              ++  N
Sbjct: 232 TKQLMQLN 239