Pairwise Alignments

Query, 824 a.a., DNA helicase II from Agrobacterium fabrum C58

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score =  476 bits (1225), Expect = e-138
 Identities = 280/647 (43%), Positives = 385/647 (59%), Gaps = 22/647 (3%)

Query: 53  LSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKA 112
           L GLN +QREAV      +L+LAGAG+GKTRVL  RIA +++   A P  ++AVTFTNKA
Sbjct: 8   LDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKA 67

Query: 113 AREMKERIGVLVGGAVEGMPWLGTFHSIGVKLLRRHAELIGLKSDFTILDTDDVVRLIKQ 172
           A EM+ RI  L+ G   GM W GTFH I  ++LR H     L  DF I+D+DD  RL+K+
Sbjct: 68  AAEMRGRIEELMHGTASGM-WCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKR 126

Query: 173 LIQAEGLDDKRWPAKQFAGMIDGWKNKGLTPPDIPEGDSRAFANGKGRELYAAYQARLKT 232
           LI+A  LDDK+WPA+Q A  I+  K++GL P  I   D       K   LY AYQ     
Sbjct: 127 LIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYLK---LYTAYQEACDR 183

Query: 233 LNACDFGDLLLHPISIFRRHTDILKEYHQKFRYILVDEYQDTNTAQYMWLRLLAQRAKDE 292
               DF ++LL  + + R +  I + Y  +F++ILVDE+QDTN  QY WLR++A      
Sbjct: 184 AGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMA----GA 239

Query: 293 PQNVCCVGDDDQSIYGWRGAEVDNILRFDKDFPGAKVIKLERNYRSTEHILGAAGHLIAH 352
             NV  VGDDDQSIYGWRGA V+NI +F ++FP    I+LE+NYRST+ IL A+  LIA+
Sbjct: 240 QSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIAN 299

Query: 353 NEGRLGKTLFTERSSPDDEKVVVHAAWDSEEEARAVGEEIEQLQRKNYKLNDMAILVRAS 412
           N  R+GK L+T+      E + V++A++  +EAR V  +I+  Q +   L D AIL R +
Sbjct: 300 NSERMGKQLWTDGLV--GEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNN 357

Query: 413 FQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRG 472
            Q R  E+  +   L YR+ GG RF+ER EI+DA++Y RL+    DD AFER++NTP RG
Sbjct: 358 AQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRG 417

Query: 473 LGDTTIRNLHDYARARDIPMLAAAADIIETDELKPKARKALFDVVQDFRRWQGLLENTEH 532
           LGD T+  +   AR R   +  A+  ++    L  +A  AL   V+     +    +   
Sbjct: 418 LGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPL 477

Query: 533 TTLAEQILDESGYTAMWQADKTAEAPGRLENLKELIRSMESFES---------MRGFLEH 583
             L +  +  SG   M+Q +K  ++  R+ENL+EL+ +   FE          +  FL H
Sbjct: 478 HVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTH 537

Query: 584 VAL-VMDAEQNAELDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRSGLEEE 642
            AL   + + +   DAV +MTLHSAKGLEF  VF+ G EEG+FP Q + +E GR  LEEE
Sbjct: 538 AALEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGR--LEEE 595

Query: 643 RRLAYVGITRAKKLCHIWFVSNRRIHGLWQSTLPSRFLDELPPAHVD 689
           RRL YVG+TRA +  +I +   RR++G  +   PSRF+ ELP   +D
Sbjct: 596 RRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLD 642