Pairwise Alignments

Query, 383 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 82.8 bits (203), Expect = 1e-20
 Identities = 66/276 (23%), Positives = 119/276 (43%), Gaps = 10/276 (3%)

Query: 101 QVSGTLSEIRAAAGARVVKGQVLARLDDEEQVIERDKAQVALRSA---IEKSSSYKNLKS 157
           +V G L  I   AG  V KG+VLARL+ +E  +   +A    + A    +++   +  K 
Sbjct: 64  RVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQDKV 123

Query: 158 FSRLDVMDAQIAEEAAKLALSTAELNLKRRDIVAPIEGVAGIVAANVGDNVTTQSTIVSI 217
            S  D   AQ    +AK     A+ NL+   ++AP +G   ++ A   + V  +  +++I
Sbjct: 124 VSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGVMNI 183

Query: 218 DDRSEILVNFWAPERFATAI-KVGMPVEATSISRPGETFTGEIEAVDNRVDEASRTIRIR 276
                + V F  P+       + G+       S P   +  + + +D   D  +R+ ++ 
Sbjct: 184 QTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSYKVT 243

Query: 277 AKFGNEKD-ELRAGMSFGVTMRFAGETYASVDPLAVQWDAEGSYVWRVTD-NKSNKVRVQ 334
                  D  +  GM+  V++     +   +   A+  +  G YVWRV D    +K  V 
Sbjct: 244 MVMERPNDVGILPGMAGRVSLMAPSGSATVIPTSALFAEQGGKYVWRVDDAGLVSKAAVT 303

Query: 335 IVQRNPDAVLVKAELAEGEPVVIEGLQRVREGGAVR 370
           + ++      V   L +G+ ++I G+  V EG  VR
Sbjct: 304 LNEQRQ----VLTGLNDGDRIIISGVSGVTEGIKVR 335