Pairwise Alignments

Query, 383 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  126 bits (317), Expect = 8e-34
 Identities = 82/307 (26%), Positives = 156/307 (50%), Gaps = 4/307 (1%)

Query: 67  ATLVVTAPAKKGIVNDRLNAIGNGQAIQSVVVMPQVSGTLSEIRAAAGARVVKGQVLARL 126
           A  VVT   +   ++  L+ +G  +A QSV +  +V+G +  I   A  +V KGQ+L +L
Sbjct: 31  AISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKL 90

Query: 127 DDEEQVIERDKAQVALRSAIEKSSSYKNLKSFSRLDV--MDAQIAE-EAAKLALSTAELN 183
           DD++      +A+  L+    K + Y+ L   + +    +DAQ A  E  +  L+ A+ N
Sbjct: 91  DDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQAN 150

Query: 184 LKRRDIVAPIEGVAGIVAANVGDNVTTQSTIVSIDDRSEILVNFWAPERFATAIKVGMPV 243
           L    I AP +G  G +  + G  V+  S ++++D+ S + ++   PER+   +  GM V
Sbjct: 151 LADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKV 210

Query: 244 EATSISRPGETFTGEIEAVDNRVDEASRTIRIRAKFGNEKDELRAGMSFGVTMRFAGETY 303
           + +S + P   F G + AVD+R+++ +  +R+R  F N    L+ GM     + F   + 
Sbjct: 211 QGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISA 270

Query: 304 ASVDPLAVQWDAEGSYVWRV-TDNKSNKVRVQIVQRNPDAVLVKAELAEGEPVVIEGLQR 362
             +   A+++     +V+ +  DN + +  V +  R  + V+++  L  GE +V++G+  
Sbjct: 271 PIIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVN 330

Query: 363 VREGGAV 369
           +R+   V
Sbjct: 331 MRDNARV 337