Pairwise Alignments

Query, 178 a.a., ECF family sigma factor from Agrobacterium fabrum C58

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 58.2 bits (139), Expect = 8e-14
 Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 17/151 (11%)

Query: 31  SRSLSRSDADGEDLLQDCVEKALANKRQWRG-TGLKTWAYTIMTNLYRNRHRAEKRHPSE 89
           SR +S S  D  D+ Q+   KA      +RG +   TW Y I  N  +N   A+ R P  
Sbjct: 38  SRYVSNS-GDVADVAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPA 96

Query: 90  S-LDGHET-----------IAIPD--TLSDTLENDRLHRALALLSPDMRAVLMLVTVEGY 135
           S +D  E            ++ P+  TLS  L+   +  A+  L  D++  + L  ++G 
Sbjct: 97  SDVDAEEAEFYEGGDALKELSNPENITLSKELKKT-VFDAIDALPDDLKTAMTLRELDGL 155

Query: 136 SYQEAAETLAIPLGTVMSRLSRARETLRQHL 166
           SY+E AE +  P+GTV SR+ RARE + + +
Sbjct: 156 SYEEIAEVMDCPVGTVRSRIFRAREAVEKKI 186