Pairwise Alignments

Query, 327 a.a., ABC transporter, substrate binding protein from Agrobacterium fabrum C58

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 49.3 bits (116), Expect = 1e-10
 Identities = 63/275 (22%), Positives = 114/275 (41%), Gaps = 29/275 (10%)

Query: 17  IATAANAADLVLYTSQPNEDAQATVDGFKAANPGIEVEWVRDGTPKIMAK-------LMA 69
           +A +A A  L+  T+   +     ++     N GI  ++ ++   K++         L A
Sbjct: 8   LAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNETLYA 67

Query: 70  EINAGNPVADVLLIADTVTLERMKQAGQLLA---HKSAEAKNIDASL----YDADGFYYS 122
           ++   N   D L++  T  + +M+  G L      K +  KN+D++     YD +  Y  
Sbjct: 68  KLKTHNQGYD-LVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDKPYDPNNDYSI 126

Query: 123 TKLIT-TGIMYNTAAAMKPT---SWKDLAKAEAKGLVTMPSPLTSGAALIHAQTLAAANG 178
             ++  TG+  NT     P    SW DL K E KG + +         +   +   + N 
Sbjct: 127 PHVVAITGLAVNTDM-YDPNDFQSWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSGNS 185

Query: 179 L-------GWDYYRQLKANEAIAGGGNGAVLKSVASGEKAYGVVVDYMPIREKAKGAPVE 231
                    +   ++L  N  +    N A      SGE   G++ +      + +G P++
Sbjct: 186 TDDKQIDEAYAELQKLMPNVLVFNSDNPAA--PYLSGEVGLGMLWNGSAAAAQKEGLPIK 243

Query: 232 FVFPEEGVSAVTEPVAIIKGTKHEEAAKKFVDYVL 266
            VFP+EG     +  AI  G K+ +AA K +D++L
Sbjct: 244 LVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLL 278