Pairwise Alignments

Query, 327 a.a., ABC transporter, substrate binding protein from Agrobacterium fabrum C58

Subject, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 45.1 bits (105), Expect = 3e-09
 Identities = 85/335 (25%), Positives = 145/335 (43%), Gaps = 44/335 (13%)

Query: 1   MKTLLSAFTAIVSLGFIATAANAADLVLYTSQPNEDAQATVDGFKAANPGIEVEW-VRDG 59
           MK  L A +A+ +     T A A D  LY    +E   + V        GI+V +   + 
Sbjct: 1   MKNKLFA-SALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYES 59

Query: 60  TPKIMAKLMAEINAGNPVADVLLIADTVTLERMKQAGQL--LAH-KSAEAKNIDASLYDA 116
              + AKL  +  AG      L++  T  + +M++ G L  + H K +  K++D +  + 
Sbjct: 60  NESMYAKLKTQ-GAGYD----LVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK 114

Query: 117 D---GFYYSTKLI--TTGIMYNTAAAMKPT--SWKDLAKAEAKGLVTMPSPLTSGAALIH 169
               G  +S   I   TGI  NT    K +  +W DL  A+  G + +   +     + H
Sbjct: 115 PFDPGNKFSIPYIWGATGIGINTDMLDKKSLKNWGDLWDAKWAGQLML---MDDAREVFH 171

Query: 170 AQTLAAANGLGWD-----------YYRQLKA---NEAIAGGGNGAVLKSVASGEKAYGVV 215
                A + LG+             YR+LK    N  +      A      +GE + G++
Sbjct: 172 I----ALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPA--NPYLAGEVSLGML 225

Query: 216 VDYMPIREKAKGAPVEFVFPEEGVSAVTEPVAIIKGTKHEEAAKKFVDYVL-SEKGQQGF 274
            +      + +GAP++ ++PE+G     + ++I  G K+ EAA K +D++L  E   +  
Sbjct: 226 WNGSAYMARQEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIA 285

Query: 275 VKLGY-IPVR-ADAGMPEGFPARDKIKVLPLSAAD 307
           +++GY  PV+ A   +P+ F A D     P S  D
Sbjct: 286 LEIGYPTPVKTAHDLLPKEF-ANDPSIYPPQSVID 319