Pairwise Alignments

Query, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score = 47.0 bits (110), Expect = 4e-09
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 9/140 (6%)

Query: 599 DDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDL 658
           D+ +  + ET      ++  V T++  E L ++L  +G +   +H DI    R   +  +
Sbjct: 253 DEAMARLLETEETD-ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHI 311

Query: 659 RLGAFDVLVGINLLREGLDIPECGFVAILDA--DKEGFLRSETSLIQTIGRAARNVDGKV 716
           + G  D+LV  +++  GLD+P    V   D   D E ++      I   GRA R   GK 
Sbjct: 312 KQGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHR----IGRTGRAGRK--GKA 365

Query: 717 ILYADNITGSMKRAMEETSR 736
           IL        M R +E  +R
Sbjct: 366 ILLVRTNQIRMLRTIERVTR 385



 Score = 32.0 bits (71), Expect = 1e-04
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 179 PAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRP-AVILAPNKTLAA 237
           P   Q  AI  L+EG ++  ++Q   G T +     + K+  +  +P A+++AP + LA 
Sbjct: 49  PTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAI 108

Query: 238 QLYSEFKN 245
           Q+ +E KN
Sbjct: 109 QVAAEIKN 116