Pairwise Alignments

Query, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 58.2 bits (139), Expect = 3e-12
 Identities = 73/309 (23%), Positives = 126/309 (40%), Gaps = 43/309 (13%)

Query: 208 GSGKTFTMAKVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAY 267
           G+     +A++  A     ++  P+   A +L  E + F         V+ +  ++   Y
Sbjct: 26  GASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSE-----VALFPDWETLPY 80

Query: 268 VPRSDTFIEKESSINEQIDRMRH--SATRSLLERDDCIIVASVSCIYGIGSVETYTAM-T 324
               D F   +  I+++I R+    S TR        I +  VS +    S   +    T
Sbjct: 81  ----DNFSPHQDIISDRISRLYQLPSLTRG-------ITIVPVSTLLQRQSPRDFLLQHT 129

Query: 325 FQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFG 384
             ++ GD     +L   L    Y+  D  F  G +  RG  +++FP    D  +RI  F 
Sbjct: 130 LIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDP-FRIDFFD 188

Query: 385 DEIDSITEFDPLTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAG 444
           DEID+I  FDP   +   ++  +++     +    PT   AI+  +   + R        
Sbjct: 189 DEIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR-------- 236

Query: 445 RLLEAQRLEQRTRYDIEMLEATGSCAGIENYSRYLTGRNPGEPPPTLFEYIPDNA-LLFI 503
              EA+R E  + Y  ++ + T   AGIE +          E   TLF+Y+P N+ LL +
Sbjct: 237 --FEARR-EPESVYS-QVSKGTWP-AGIEYWQPLFF-----EHSETLFDYLPANSQLLVV 286

Query: 504 DESHVSVSQ 512
            E   ++ Q
Sbjct: 287 GELEKAIDQ 295