Pairwise Alignments

Query, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

Subject, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

 Score =  775 bits (2002), Expect = 0.0
 Identities = 398/666 (59%), Positives = 495/666 (74%), Gaps = 6/666 (0%)

Query: 175 SEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKT 234
           S+YQPAGDQPTAI  L+EG+ +G   Q LLGVTGSGKTFT+A VI   QRP +ILAPNKT
Sbjct: 9   SDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKT 68

Query: 235 LAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATR 294
           LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTFIEK++S+N  I++MR SAT+
Sbjct: 69  LAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATK 128

Query: 295 SLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDF 354
           +LLER D +IVASVS IYG+G  ++Y  M   ++ GD ++QR +L  L   QY R DM F
Sbjct: 129 ALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAF 188

Query: 355 QRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTG-DLQSVKIYANS 413
           +RG FRVRG+ I+IFPA  +  A R+ MF DEI+ I+ FDPLTG  T  DL    IY  +
Sbjct: 189 ERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKT 248

Query: 414 HYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAGIE 473
           HYVTPR  +  AI+ IK EL+VR   L    +LLE QR+ QRT++DIEM+   G C+GIE
Sbjct: 249 HYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIE 308

Query: 474 NYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFR 533
           NYSRYL+GR  GEPPPTLF+Y+P + LL IDESHV+V QIG M++GD  RK TL E+GFR
Sbjct: 309 NYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFR 368

Query: 534 LPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQSGGVFAEQVIRPTGLIDPPVEVRS 593
           LPS +DNRPL+F+E++A+ P T+ VSATP  +E+ +SGG  AEQV+RPTGL+DP +EVR 
Sbjct: 369 LPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPIIEVRP 428

Query: 594 ARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIE 653
             +QVDD+L E R  AA   R L T LTKRMAEDLTEYLHE GV+VRY+HSDIDT+ER+E
Sbjct: 429 VATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVE 488

Query: 654 IIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVD 713
           IIRDLRLG FDVLVGINLLREGLD+PE   VAILDADKEGFLRSE SLIQT+GRAARNV+
Sbjct: 489 IIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVN 548

Query: 714 GKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDIL---DSVYERD 770
           GK ILYAD+IT SM++A++ET RRREKQ+AYN + GITP+ +K  + DI+   D    R 
Sbjct: 549 GKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRK 608

Query: 771 HVRADISGVSGKGFADGGH--LVGNNLQAHLNALEKSMRDAAADLDFEKAARLRDEIKRL 828
              + +  ++        +  L    L+  ++ LE +M   A +L+FE AA+ RDEI +L
Sbjct: 609 QKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDEIHQL 668

Query: 829 KAAELA 834
           +   +A
Sbjct: 669 RQQFIA 674