Pairwise Alignments

Query, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

Subject, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 65.5 bits (158), Expect = 2e-14
 Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 30/228 (13%)

Query: 272 DTFIEKESSINEQIDRMRHSATRSLLERDD--CIIVASVSCIYGIGSVETYTAMTFQMQV 329
           D+F   +  I+++++      T S LER     +IV   + +  +       A    ++ 
Sbjct: 84  DSFSPHQDLISQRLE------TLSNLERGKGRLVIVPLTTLMVRLPPKAFLAANVLILKK 137

Query: 330 GDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDS 389
           GDR   +Q+   LV   Y   +  ++ G F +RG  ++IFP+   +   RI +F DE++S
Sbjct: 138 GDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPL-RIELFDDEVES 196

Query: 390 ITEFDPLTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEA 449
           I  FDP T + +G++ S+++     +    PT + AI+  ++  +     +  A   +  
Sbjct: 197 IRHFDPETQRSSGEVDSIRMLPAREF----PTDSQAIEGFRQRYRRTFETVNNAAESV-- 250

Query: 450 QRLEQRTRYDIEMLEATGSCAGIENYSRYLTGRNPGEPPPTLFEYIPD 497
                      +++      AGIENY          +   TLF+Y+P+
Sbjct: 251 ----------YQLVSRNLMPAGIENYLPLFF-----DDTATLFDYLPE 283



 Score = 34.3 bits (77), Expect = 5e-05
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 622 KRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPEC 681
           ++ A+D+ E L E   RV   H  +   E   ++ D     F+VLV   ++  G+D+P  
Sbjct: 827 EKAAQDIRELLPE--ARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSA 884

Query: 682 GFVAILDADKEGFLRSETSLIQTIGRAARN 711
             + I  AD  G       L Q  GR  R+
Sbjct: 885 NTILIDRADHFGL----AQLHQLRGRVGRS 910



 Score = 30.4 bits (67), Expect = 7e-04
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 177 YQPAGDQPTAIADLVEGINSGER-SQVLLGVTGSGKT---FTMAKVIEATQRPAVILAPN 232
           ++   DQ TAI  +++ +   +   +++ G  G GKT      A +  ++ +  V+L P 
Sbjct: 603 FEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPT 662

Query: 233 KTLAAQLYSEFKNFFPD 249
             LA Q +  FK+ F D
Sbjct: 663 TLLAQQHFENFKDRFAD 679