Pairwise Alignments

Query, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

Subject, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

 Score = 55.1 bits (131), Expect = 3e-11
 Identities = 72/321 (22%), Positives = 123/321 (38%), Gaps = 63/321 (19%)

Query: 196 SGERSQVLLGVTGSGKTFTMAKV---IEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAV 252
           SGER   L  + GS     +A++     + +R   +L  +   A +L  E   F PD  V
Sbjct: 68  SGERLH-LPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEEIPWFAPDLKV 126

Query: 253 EYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLLERDDC--IIVASVSC 310
                      P+      D F      ++E++      AT   + R +C  ++V + + 
Sbjct: 127 RLL--------PDWETLPYDNFSPHHDLVSERL------ATLYAVSRGECEVLLVPATTA 172

Query: 311 IYGIGSVETYTAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFP 370
           +Y +       A TF ++ G++LD  Q  + L    Y         G + +RG  +++FP
Sbjct: 173 VYRLTPPSYLAAYTFFLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFP 232

Query: 371 AHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIK 430
                  +RI +F +EI+++  FD  T +    +  +++                     
Sbjct: 233 MG-SALPYRIDLFDEEIETLRTFDADTQRSLYPVPEIRL--------------------- 270

Query: 431 EELKVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAGIENYSRYLTGRNPG----- 485
             L  R   L+  GR     R  QR R   E+ E   + +GI  Y     G         
Sbjct: 271 --LPAREFPLDDGGR----TRFRQRFR---EVFEGDPAKSGI--YKDVSNGVPSAGIEYW 319

Query: 486 -----EPPPTLFEYIPDNALL 501
                E   TLF+Y+P +A+L
Sbjct: 320 LPLFFEETATLFDYLPKDAVL 340



 Score = 39.3 bits (90), Expect = 2e-06
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 177 YQPAGDQPTAIADLVEGINSGE-RSQVLLGVTGSGKT---FTMAKVIEATQRPAVILAPN 232
           ++   DQ TAIA ++E + SG+   +++ G  G GKT      A V  A  +   +L P 
Sbjct: 654 FEETEDQATAIAAVIEDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLCPT 713

Query: 233 KTLAAQLYSEFKNFFPDNAVE 253
             L  Q Y  FK+ F D  V+
Sbjct: 714 TLLCEQHYQTFKDRFADWPVQ 734