Pairwise Alignments

Query, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

Subject, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

 Score =  652 bits (1682), Expect = 0.0
 Identities = 341/661 (51%), Positives = 456/661 (68%), Gaps = 28/661 (4%)

Query: 172 RMDSEYQPAGDQPTAIADLVEGI--NSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVIL 229
           ++ +E++P G Q  AIA LV+ +  N  +  Q LLGVTGSGKTFT+A VIE  Q+P +++
Sbjct: 7   KLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLVI 66

Query: 230 APNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMR 289
           A NKTLAAQLY+EFK FFP+N VEYFVSYYDYYQPE+Y+P+ D +IEK++ IN +I++MR
Sbjct: 67  AHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQMR 126

Query: 290 HSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQRQLLADLVAQQYKR 349
             AT ++L R D IIVASVSCIYG+G+ E +  M F+++VG+++ +  ++  LV  QY+R
Sbjct: 127 LRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYER 186

Query: 350 RDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLQSVKI 409
            DM+   G FRV+GDT++I P + +D   R+ MFGDEID I E DP    K  ++ S  +
Sbjct: 187 NDMELVPGRFRVKGDTLDIIPGYQDDIL-RVEMFGDEIDRIYELDPKNMSKKHEIDSFYM 245

Query: 410 YANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSC 469
           Y   H+V P      AI SI +EL   L  L+    +L++ RL+Q+T YDIEM+E TGSC
Sbjct: 246 YPAKHFVIPEEDKKNAINSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETGSC 301

Query: 470 AGIENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAE 529
            GIENYSR+   R  GEP   L +Y P++ L+ IDESH ++ QI GMY+GD  RK +L +
Sbjct: 302 KGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLID 361

Query: 530 YGFRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQSGGVFAEQVIRPTGLIDPPV 589
           YGFRLPS  DNRPL+FEE+       + VSATPG +E++ S  V  EQ+IRPTGL+DP V
Sbjct: 362 YGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQV-VEQIIRPTGLLDPEV 420

Query: 590 EVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTL 649
           E+R   +QV+D++ E  +   KG R L T LTKR+AE+LTEYL ++ V+ RY+HSDIDT+
Sbjct: 421 EIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDTI 480

Query: 650 ERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAA 709
           ER EIIR+LRLG FD LVGINLLREGLDIPE GFV ILDADKEGFLR++ SLIQTIGRAA
Sbjct: 481 ERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAA 540

Query: 710 RNVDGKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYER 769
           RN + KV+LYA  +T S+K+A+ ET RRR+ Q  +N +H ITP+++   I + +  + + 
Sbjct: 541 RNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISDV 600

Query: 770 DHVR-ADISGVSGKGFADGGHLVGNNLQAHLNALEKSMRDAAADLDFEKAARLRDEIKRL 828
            H+  ADI  V                   +  LE  M +AA  L+FEKA ++RD I +L
Sbjct: 601 KHIPVADIPNV-------------------IVELEAEMYEAAEALEFEKAIKIRDTIAKL 641

Query: 829 K 829
           K
Sbjct: 642 K 642