Pairwise Alignments

Query, 180 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 212 a.a., RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score = 75.1 bits (183), Expect = 8e-19
 Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 5/179 (2%)

Query: 5   EIATLINRVGMG-DRSAFVSLYQATSPKLFAICLKILRDRTEAEEALQEIYIKVWQRART 63
           E++T + RV    D+ AF  L+Q  +PK+    +K L +  +A E +QE    VW++A  
Sbjct: 28  ELSTWLVRVADARDKQAFTRLFQFFAPKIKRFGIKQLGNEAQAHELVQETMSNVWRKAHL 87

Query: 64  FAVSAGKPATWLATIARNHAIDTIRARKPASDDI--DEAYDLVDESIRDPEQQVVLVDE- 120
           +    G   TW+ T+ RN A D +R  K  ++    D+ + L    ++  E+ +   D  
Sbjct: 88  YDGDKGAATTWVYTVMRNAAFDMLRRVKAKAEMNLGDDIWPLEQAQVQSEEEPLHFADHL 147

Query: 121 -GRRIDDCMRELETVHAQAVRRAYVEGLSYLELSDELRVPLNTVRTWLRRSLLKLRECM 178
             +++   +  L       V+  Y + LS  +L+ +  VP+ T+++ LR +L KL++ M
Sbjct: 148 MEKQMLAYVDSLPEAQRAVVKGVYYQELSQEQLAQQFGVPIGTIKSRLRLALAKLKQQM 206