Pairwise Alignments

Query, 180 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 189 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 79.3 bits (194), Expect = 4e-20
 Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)

Query: 17  DRSAFVSLYQATSPKLFAICLKILRDRTEAEEALQEIYIKVWQRARTFAVSAGKPATWLA 76
           D +AF  L++  +P++ A  +K     T AE+  Q++   VWQ+A  F  S    ATW+ 
Sbjct: 29  DTAAFARLFRHFAPRIKAFLIKSGASDTLAEDCAQDVMTTVWQKAHMFDPSRASVATWIF 88

Query: 77  TIARNHAIDTIR-ARKPASDDIDEAYDLVDESIRDPEQQVVLVDEGRRIDDCMRELETVH 135
           TIARN  ID +R  R+P  +++        E   D    ++L  E  ++   + +L    
Sbjct: 89  TIARNRRIDMLRKERRPEPEELPWG----PEPEPDQADVLMLQQESEKLQAALIQLPEKQ 144

Query: 136 AQAVRRAYVEGLSYLELSDELRVPLNTVRTWLRRSLLKLR 175
              V R Y   +S+ E++ +  +PL T+++ LR +L KLR
Sbjct: 145 RILVERCYFGDMSHSEIATQTGLPLGTIKSRLRLALDKLR 184