Pairwise Alignments

Query, 1402 a.a., DNA-directed RNA polymerase beta from Agrobacterium fabrum C58

Subject, 1399 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Pseudomonas fluorescens FW300-N2E2

 Score = 1627 bits (4212), Expect = 0.0
 Identities = 824/1365 (60%), Positives = 1046/1365 (76%), Gaps = 14/1365 (1%)

Query: 3    QEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARI 62
            ++++NL   Q   + FD+IRI +ASPE I SWS+GE+KKPETINYRTFKPERDGLFCA+I
Sbjct: 2    KDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKI 61

Query: 63   FGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLP 122
            FGP+KDYECLCGKYKR+K++G+ICEKCGVEV L++VRRERM HIELA+PVAHIWFLKSLP
Sbjct: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSLP 121

Query: 123  SRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTAMI 182
            SRI  L+DMTL+D+ERVLYFE+Y+V +PG+T+L++ QLL++E+Y  A++EFG+D F A +
Sbjct: 122  SRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDD-FDARM 180

Query: 183  GAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKFMKRLKIVENFMESGNRPEWMIMK 242
            GAEA+ E+L +++LE   G LR E+ +T S+ K KK  KRLK++E F  SGN PEWM++ 
Sbjct: 181  GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT 240

Query: 243  VVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRMLQ 302
            V+PV+PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP II+RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ 300

Query: 303  ESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPE 362
            E+VDAL DNGRRGR ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI  GP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 363  LKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIREHP 422
            L+LHQCGLPKKMALELFKPFI+ +L+ +G ++T+K AKK+VE+E PEVWD+L EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP 420

Query: 423  VLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA 482
            VLLNRAPTLHRLGIQAFEP+L+EGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 483  RVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALENK 542
            R LMMSTNNIL PANG PIIVPSQD+VLGLYY++    N  GEG  F+D+ E+       
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG 540

Query: 543  VVTLHAKIRGRFKTV--DADGKPV--SKIHETTPGRMLIGELLPKNVNVPFDTCNQEMTK 598
               LHAK++ R      D DG  V  ++I +TT GR L+ +++PK ++  FD  N  M K
Sbjct: 541  EAALHAKVKVRINETVNDRDGGSVTNTRIVDTTVGRALLFQVVPKGLS--FDVVNLPMKK 598

Query: 599  KNISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKVKIVGDTE 658
            K ISK+I+  YR  G K+TVIF D++M  GF+++  +G+S G +D VIPD K +I+G   
Sbjct: 599  KAISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAAT 658

Query: 659  ALVKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARI---KAVEFDPETGRQKP 715
              VKE E QY  GL+TQGEKYNKV+D W KA ++V++ MMA +   K ++       Q+ 
Sbjct: 659  EEVKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGNEVDQES 718

Query: 716  MNSIYMMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHG 775
             NS+YMM+ SGARGS  Q+RQL GMRGLMAKP G IIETPI +NF+EGL+V +YF STHG
Sbjct: 719  FNSMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHG 778

Query: 776  ARKGLADTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMTAIVDAGQIVASIGAR 835
            ARKGLADTALKTANSGYLTRRLVDVAQD +V  +DCGT+ GL MT  ++ G +V  +G R
Sbjct: 779  ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGER 838

Query: 836  ILGRTALDDIDNPVTGENIVKAGTLIDEADVAIIEKAGIQSVRIRSALTCEVQIGVCGVC 895
            +LGR    D+  P T + IV AGTL+DE  V  IE   I  V +RS ++CE + G+C  C
Sbjct: 839  VLGRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKC 898

Query: 896  YGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQS-FLEASYEGTI 954
            YGRDLARG  VN+GEAVGVIAAQSIGEPGTQLTMRTFH+GG A+    +  ++    GT+
Sbjct: 899  YGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTV 958

Query: 955  QIKNRNILRNSEGVLIAMGRNMSVTILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLA 1014
            ++ N   +   +G L+A+ R+  + I D+ G ER   ++ YG+ I V +GDKV  G  +A
Sbjct: 959  RLHNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVA 1018

Query: 1015 EWDPYTRPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTP-RGSDLKPAI 1073
            +WDP+T P++TE++GTV +  + +G+++   TDE TG+T  +V+D +  P  G D++PA+
Sbjct: 1019 KWDPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAV 1078

Query: 1074 IIKDASGAVAKL-SRGGEARFHLSVDAILSVEPGSKVSQGDVLARSPLESAKTKDITGGL 1132
             + D +G    L      A++ L  +A++ V  G++++ GDV+AR P E++KT+DITGGL
Sbjct: 1079 KMVDDNGKDLLLPGTDVIAQYFLPANALVGVADGARIAIGDVIARIPQETSKTRDITGGL 1138

Query: 1133 PRVAELFEARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFH 1192
            PRVA+LFEARRPK+ +I+AE+ GTI  G++ K KRR++I P  DG +P E LIPK +  +
Sbjct: 1139 PRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITP-NDGSDPYEELIPKWRHLN 1197

Query: 1193 LQEGDYIEKGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIV 1252
            + EG+ + +GE I DG   PHDIL + GV ALA Y+VNEIQ+VYRLQGV INDKHIE I+
Sbjct: 1198 VFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETIL 1257

Query: 1253 RQMLQKVEITDAGDSQYIVGDNVDRIEMEDMNDRLIEEGKKPAYGEPVLLGITKASLQTP 1312
            RQML+KVEI ++GDS +I GD ++   +   N+RL  E K  +    VLLGITKASL T 
Sbjct: 1258 RQMLRKVEIAESGDSSFIKGDQMELTHVLVENERLATEDKFVSKFTRVLLGITKASLSTE 1317

Query: 1313 SFISAASFQETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTG 1357
            SFISAASFQETT+VLTEAA+ GK D L+GLKENV+VGRLIPAGTG
Sbjct: 1318 SFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTG 1362