Pairwise Alignments

Query, 1402 a.a., DNA-directed RNA polymerase beta from Agrobacterium fabrum C58

Subject, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

 Score = 1600 bits (4143), Expect = 0.0
 Identities = 806/1379 (58%), Positives = 1042/1379 (75%), Gaps = 15/1379 (1%)

Query: 3    QEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARI 62
            ++++N    Q   + FD+I+I +ASP+ I SWS+GE+KKPETINYRTFKPERDGLFCARI
Sbjct: 2    KDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61

Query: 63   FGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLP 122
            FGP+KDYECLCGKYKR+K++G+ICEKCGVEVT ++VRR+RMGHIELA+PVAHIWFLKSLP
Sbjct: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLP 121

Query: 123  SRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTAMI 182
            SRI  L+DM L+D+ERVLYFE Y+VTEPG+T L++ Q+L+EEEY+  ++E+G D+FTA +
Sbjct: 122  SRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWG-DEFTAKM 180

Query: 183  GAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKFMKRLKIVENFMESGNRPEWMIMK 242
            GAEAI ++LASM+L   A  +R EL  T S+ K+KK  KRLK+VE F+ SGN+PEWMI+ 
Sbjct: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240

Query: 243  VVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRMLQ 302
            V+PV+PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL AP II+RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300

Query: 303  ESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPE 362
            ESVDAL DNGRRGR ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI  GP 
Sbjct: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 363  LKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIREHP 422
            L+LHQCGLPKKMALELFKPFIY++L+ +G ++T+K AKK+VE+E+  VWDILDEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 423  VLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA 482
            VLLNRAPTLHRLGIQAFEP+L+EGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 483  RVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALENK 542
            R LMMSTNNIL PA+G PIIVPSQD+VLGLYY++    N  GEGM  +   E   A   K
Sbjct: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540

Query: 543  VVTLHAKIRGRF-KTVDADGKPV---SKIHETTPGRMLIGELLPKNVNVPFDTCNQEMTK 598
               LHA+++ R  +T+  +   +   +K+ +TT GR ++ +++PK   +P+   NQ++ K
Sbjct: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPK--GLPYSLVNQKLGK 598

Query: 599  KNISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKVKIVGDTE 658
            K IS +++  YR  G KDTVIF D+IM  GF++A  +G+S G DDMV+P +K   + + E
Sbjct: 599  KQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAE 658

Query: 659  ALVKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARI---KAVEFDPETGRQKP 715
              V+E ++Q+  GL+T GE+YNKV+D W    ++VA+ MM  +   + +    E  +Q+ 
Sbjct: 659  EEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQES 718

Query: 716  MNSIYMMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHG 775
             NSIYMM+ SGARGS  Q+RQL GMRGLMA+P G IIETPI +NFKEGL V +YF STHG
Sbjct: 719  FNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHG 778

Query: 776  ARKGLADTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMTAIVDAGQIVASIGAR 835
            ARKGLADTALKTANSGYLTRRLVDVAQD +V   DCGT +G+ MT  ++ G +  ++   
Sbjct: 779  ARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTEL 838

Query: 836  ILGRTALDDIDNPVTGENIVKAGTLIDEADVAIIEKAGIQSVRIRSALTCEVQIGVCGVC 895
             LGR   +DI  P T E ++   TL+DE    +I    +  +++RS +TC+   G C  C
Sbjct: 839  ALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQC 898

Query: 896  YGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAN-VVDQSFLEASYEGTI 954
            YGRDLARG  VN GEAVGVIAAQSIGEPGTQLTMRTFH+GG A+    ++ ++A   G++
Sbjct: 899  YGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSV 958

Query: 955  QIKNRNILRNSEGVLIAMGRNMSVTILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLA 1014
            ++ N   + N +G L+   R   +TI+DE G  +   ++ YGS +   DGD V  G+ +A
Sbjct: 959  KLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVA 1018

Query: 1015 EWDPYTRPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTP-RGSDLKPAI 1073
             W+ +T P++TEV G V F D++DG++V   TD+ TG++  +V +  + P  G D++PAI
Sbjct: 1019 NWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAI 1078

Query: 1074 IIKDASGA-VAKLSRGGEARFHLSVDAILSVEPGSKVSQGDVLARSPLESAKTKDITGGL 1132
             + DA+G  V        A++ L   AI++++ G++V+ GD LAR P +S   KDITGGL
Sbjct: 1079 KLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGL 1138

Query: 1133 PRVAELFEARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFH 1192
            PRVA+LFEAR+PK+ AI+AE  GT+  G++ K KRR++I    D  +  E +IPK +  +
Sbjct: 1139 PRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLII--TRDSGDTYEEMIPKHRQLN 1196

Query: 1193 LQEGDYIEKGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIV 1252
            + EG+ IE+G+ I DG  +PHDIL ++G+ A+ +Y+ NE+QEVYRLQGV INDKHIE IV
Sbjct: 1197 VFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIV 1256

Query: 1253 RQMLQKVEITDAGDSQYIVGDNVDRIEMEDMNDRLIEEGKKPAYGEPVLLGITKASLQTP 1312
            RQML+K  IT AGDS+++ G+ V+  +++  N +L+EEGK+PA  E  LLGITKASL T 
Sbjct: 1257 RQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATE 1316

Query: 1313 SFISAASFQETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRD 1371
            SFISAASFQETT+VLTEAA++GK D L+GLKENVIVGRLIPAGTG    Q R+   +++
Sbjct: 1317 SFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQE 1375