Pairwise Alignments

Query, 1402 a.a., DNA-directed RNA polymerase beta from Agrobacterium fabrum C58

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Klebsiella michiganensis M5al

 Score = 1605 bits (4157), Expect = 0.0
 Identities = 818/1372 (59%), Positives = 1036/1372 (75%), Gaps = 14/1372 (1%)

Query: 3    QEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARI 62
            ++++     Q   + FD+I+I++ASP+ I SWS+GE+KKPETINYRTFKPERDGLFCARI
Sbjct: 2    KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61

Query: 63   FGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLP 122
            FGP+KDYECLCGKYKR+K++G+ICEKCGVEVT ++VRRERMGHIELA+P AHIWFLKSLP
Sbjct: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121

Query: 123  SRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTAMI 182
            SRI  LLDM L+D+ERVLYFE+Y+V E G+T+L++ Q+L+EE+Y+ A++EFG D+F A +
Sbjct: 122  SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKM 180

Query: 183  GAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKFMKRLKIVENFMESGNRPEWMIMK 242
            GAEAI  +L SM+LE+    LR EL ET S+ K+KK  KR+K++E F++SGN+PEWMI+ 
Sbjct: 181  GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 243  VVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRMLQ 302
            V+PV+PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP II+RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 303  ESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPE 362
            E+VDAL DNGRRGR ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI  GP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 363  LKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIREHP 422
            L+LHQCGLPKKMALELFKPFIY +L+ +G ++T+K AKK+VE+E+  VWDILDEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 423  VLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA 482
            VLLNRAPTLHRLGIQAFEP+L+EGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 483  RVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALENK 542
            R LMMSTNNIL PANG PIIVPSQD+VLGLYY++    N  GEGM  +   E        
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG 540

Query: 543  VVTLHAKIRGRFKTVDAD--GKPVSK--IHETTPGRMLIGELLPKNVNVPFDTCNQEMTK 598
            + +LHA+++ R    + D  G+ V+K  + +TT GR ++  ++PK   +PF   NQ + K
Sbjct: 541  LASLHARVKVRITEYEKDENGEFVAKTSLKDTTVGRAILWMIVPK--GLPFSIVNQALGK 598

Query: 599  KNISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKVKIVGDTE 658
            K ISKM++T YR  G K TVIF D+ M  GF++A R+G S G DDMVIP+ K +I+ + E
Sbjct: 599  KAISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKYEIISEAE 658

Query: 659  ALVKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIK---AVEFDPETGRQKP 715
            A V E ++Q+  GL+T GE+YNKV+D W  A ++V++ MM  ++    +  + E  +Q  
Sbjct: 659  AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRNGEEEQQVS 718

Query: 716  MNSIYMMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHG 775
             NSIYMM+ SGARGS  Q+RQL GMRGLMAKP G IIETPI +NF+EGL V +YF STHG
Sbjct: 719  FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG 778

Query: 776  ARKGLADTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMTAIVDAGQIVASIGAR 835
            ARKGLADTALKTANSGYLTRRLVDVAQD +V   DCGT +G+TMT +++ G +   +  R
Sbjct: 779  ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDR 838

Query: 836  ILGRTALDDIDNPVTGENIVKAGTLIDEADVAIIEKAGIQSVRIRSALTCEVQIGVCGVC 895
            +LGR   +D+  P T + +V   TL+ E    ++E+  + SV++RS ++C+   GVC  C
Sbjct: 839  VLGRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEENSVDSVKVRSVVSCDTDFGVCAHC 898

Query: 896  YGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAN-VVDQSFLEASYEGTI 954
            YGRDLARG  +N GEA+GVIAAQSIGEPGTQLTMRTFH+GG A+    +S ++   +G+I
Sbjct: 899  YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSI 958

Query: 955  QIKNRNILRNSEGVLIAMGRNMSVTILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLA 1014
            ++ N   + NS G L+   RN  + ++DE G  + S +V YGS +   DG++V  G+ +A
Sbjct: 959  RLSNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVA 1018

Query: 1015 EWDPYTRPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVID-WRSTPRGSDLKPAI 1073
             WDP+T P++TEV G V F D++DG ++   TDE TG++   V+D    T  G DL+PA+
Sbjct: 1019 NWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPAL 1078

Query: 1074 IIKDASG-AVAKLSRGGEARFHLSVDAILSVEPGSKVSQGDVLARSPLESAKTKDITGGL 1132
             I DA G  V        A++ L   AI+ +E G ++S GD LAR P ES  TKDITGGL
Sbjct: 1079 KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGL 1138

Query: 1133 PRVAELFEARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFH 1192
            PRVA+LFEARRPK+ AI+AEI G I  G++ K KRR++I P  DG +P E +IPK +  +
Sbjct: 1139 PRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPV-DGSDPYEEMIPKWRQLN 1197

Query: 1193 LQEGDYIEKGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIV 1252
            + EG+ +E+G+ + DG  APHDIL ++GV A+  Y+VNE+Q+VYRLQGV INDKHIEVIV
Sbjct: 1198 VFEGERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257

Query: 1253 RQMLQKVEITDAGDSQYIVGDNVDRIEMEDMNDRLIEEGKKPAYGEPVLLGITKASLQTP 1312
            RQML+K  I  AG S ++ G+ V+   ++  N  L   GK  A     LLGITKASL T 
Sbjct: 1258 RQMLRKATIESAGSSDFLEGEQVEYSRVKIANRDLEANGKVGATFARDLLGITKASLATE 1317

Query: 1313 SFISAASFQETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIR 1364
            SFISAASFQETT+VLTEAA+AGK D L+GLKENVIVGRLIPAGTG    Q R
Sbjct: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR 1369