Pairwise Alignments

Query, 309 a.a., ABC transporter, substrate binding protein (ribose) from Agrobacterium fabrum C58

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score =  148 bits (373), Expect = 2e-40
 Identities = 88/280 (31%), Positives = 158/280 (56%), Gaps = 5/280 (1%)

Query: 8   LTSAALLALSLGSANAAEVKKIGLAVANLQANFFNQIKQAVEAEAKTRGIAVVTVDAKGD 67
           L SAALL+ S+     A+   + + ++ L   FF  +K   EA+AK  G  ++ +D++ D
Sbjct: 9   LISAALLSTSVSFVAQAQ-DTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDSQND 67

Query: 68  GPTQVNQIQDLLTQNIDALIYIPAGAAAATVPVKLAKAAGVPVINIDRNADGAPGDTFLA 127
              +++ ++DL  + + A++  P  + A +  +++A  + +PV+ +DR A      + +A
Sbjct: 68  PSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEVVSHIA 127

Query: 128 TDSVASAKSVCDYIIKQAGGAGKMVIIHGQKGTTPEVDRTKGCMESVKANSGVKIVAEQW 187
           +D+V   +    +I  + G   K++ + G  GT+   +R +G M +VK  S ++++A Q 
Sbjct: 128 SDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVK-GSKMQLLASQP 186

Query: 188 SNMWSQDEGFQIMQNMLQANPDVSIVFAQADGLALGAAQAIKVANPSQKIVVGGFDGDTA 247
           ++ + + +G  +M+N+L ANPDV  VFAQ D +ALGA +AI+ +  S  IV  GFDG   
Sbjct: 187 AD-FDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKSVMIV--GFDGTDD 243

Query: 248 ALEALKNGVFDVTATQQTQKMGRMAVEMAVKIVGGEKVPA 287
            + A++ G    T  QQ   +G + +E A K++ GEKV A
Sbjct: 244 GIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEA 283