Pairwise Alignments

Query, 492 a.a., ABC transporter, nucleotide binding/ATPase protein (ribose) from Agrobacterium fabrum C58

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  385 bits (990), Expect = e-111
 Identities = 220/493 (44%), Positives = 313/493 (63%), Gaps = 5/493 (1%)

Query: 1   MREPVLSLRGISKRYGPLEVLKSVDLEVYPGEVVALLGENGAGKSTLSGIIAGSREPSEG 60
           M + +L+L  I K +  ++ L    L VYPG V+AL+GENGAGKSTL  ++ G      G
Sbjct: 1   MTQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAG 60

Query: 61  KMTWLGQPYQPASPREAIDKGIVLIHQELKLLPELSIAENVFIGR-WPMKNGIVDRAEMV 119
            + + GQP     PR++   GI +IHQEL L+P+L+IAEN+F+GR      G +   EM 
Sbjct: 61  SIEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMH 120

Query: 120 RRAQQQLARLNLHIPATRKVAGLSTANQQLIEIAKALALDAKLLILDEPTAALGGAETQA 179
           R+A Q LARLN+   A   +  LS   QQ++EIAKAL+ ++K++I+DEPT AL   ET++
Sbjct: 121 RKADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETES 180

Query: 180 LFEQVRKLRAEGVGIIYISHRMEEIRQITDRIVVLRDGERVHEFADSATPVRTIVESMVG 239
           LF  + +LR +G GI+YISHR++EI +I D I VLRDG+ + E     T    ++E MVG
Sbjct: 181 LFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVG 240

Query: 240 RSLERLFPALPEPQEKVVLEVKGLTGATNAFRDISFGVRAGEILGIAGLIGAGRTELVRA 299
           R LE  +P +   Q  + LEV GLTG  +   D+SF ++ GEILG++GL+GAGRTEL++ 
Sbjct: 241 RKLEEQYPRIAAQQGDISLEVIGLTG--SGVHDVSFTLKKGEILGVSGLMGAGRTELMKV 298

Query: 300 ISGADPTSAGEVRLDGEVLSLKSPADAIAKGIVMVPEDRKLQGLVVEHEIGENLIYANLD 359
           I GA P+  G + L+G  ++  SP D +A GI  + EDRK  GLV+   + EN+    LD
Sbjct: 299 IYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALD 358

Query: 360 RVGTG-WITPAIKRAFTRDAIAKFGVKGRS-EQPASDLSGGNQQKVVIAKWLARNPRVVV 417
           ++  G  I  A +     D I  F +K  S EQ   +LSGGNQQKV IAK L   P+V++
Sbjct: 359 QLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLI 418

Query: 418 LDEPTRGIDVGARAGIYDIIVGLAKDGVAVIVVSSDLEEVLGVSNRILVLAQGKQAGILN 477
           LDEPTRG+DVGA+  IY +I     +G+++I+VSS++ EVLG+S+RILV+ +G+ +G   
Sbjct: 419 LDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFM 478

Query: 478 RDEANDVSVMELA 490
             EA+   +M  A
Sbjct: 479 ASEADQEKLMACA 491



 Score =  102 bits (253), Expect = 4e-26
 Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 24  VDLEVYPGEVVALLGENGAGKSTLSGIIAGSREPSEGKMTWLGQPYQPASPREAIDKGIV 83
           V   +  GE++ + G  GAG++ L  +I G+     G +   G+   P SP++ +  GI 
Sbjct: 272 VSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGIA 331

Query: 84  LIHQELK---LLPELSIAENVFIGRWP-MKNGI-VDRAEMVRRAQQQLARLNLHIPATRK 138
            I ++ K   L+  LS+ EN+ +     +  G+ +  A+ V      +   N+  P+  +
Sbjct: 332 YISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQ 391

Query: 139 VAG-LSTANQQLIEIAKALALDAKLLILDEPTAALGGAETQALFEQVRKLRAEGVGIIYI 197
           + G LS  NQQ + IAK L    K+LILDEPT  +     + +++ + + +AEG+ II +
Sbjct: 392 IIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILV 451

Query: 198 SHRMEEIRQITDRIVVLRDGERVHEFADSATPVRTIVESMVGRS 241
           S  M E+  ++DRI+V+ +G    EF  S      ++   VGR+
Sbjct: 452 SSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGRN 495