Pairwise Alignments

Query, 311 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 324 a.a., tRNA 2-thiocytidine biosynthesis TtcA family protein from Methanococcus maripaludis S2

 Score = 48.5 bits (114), Expect = 2e-10
 Identities = 59/266 (22%), Positives = 106/266 (39%), Gaps = 40/266 (15%)

Query: 45  FNKLRKRLLRNVRQAFEDFGMLNGQKRWLVGLSGGKDSYGLLALLLDLKWRGLLPVELVA 104
           F ++ +R+ R V +      +++ + + LVGLSGGKDS  LL LL    +R    V++ A
Sbjct: 55  FEEISERMGRFVSKN----NIISPKDKILVGLSGGKDSLALLHLL--EPYRRKYGVQIYA 108

Query: 105 CNLDQG--------QPNFPKHVLPEYLAKIGVAHRIEYRDTYSIVKEKVPSGGTY----- 151
             +D          + N     + E+   + + H+I   D   +   K+ S  T      
Sbjct: 109 VTVDLNINGIRPWTESNKNVEKIAEHCKNLNIPHKIIAHDGNVVEMSKILSENTKGIEYS 168

Query: 152 -CSLCSRLRRGNLYRIAR----EEGCDALLLGHHREDILETFFMNFFHGGRLAGM-PAKL 205
            C  CS +RR  L   A+     +    + +GH  ED  +T   N F G  +  + P K 
Sbjct: 169 PCFSCSMVRRHVLTNYAKNNFESDSNVKIAIGHTLEDNSDTIMANIFKGNIIKALEPIKN 228

Query: 206 LNDEG-----------DLMVMRPLAYCAEEDMAKFAAAMEFPII----PCDLCGSQDGLQ 250
            N+                ++RP+   +EE + K     +         C          
Sbjct: 229 FNETDVDFKDFKLNLKSCCMIRPMLNVSEEKIVKALVECDIEYYHDKDECPYSRHNGNGI 288

Query: 251 RNAMKDMLADIERRMPGRKDVMLRAL 276
           R    ++L  IE  +P  +++++ ++
Sbjct: 289 RKKSHEVLESIEEDVPNIREMVISSI 314