Pairwise Alignments

Query, 503 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  290 bits (742), Expect = 1e-82
 Identities = 180/486 (37%), Positives = 265/486 (54%), Gaps = 21/486 (4%)

Query: 4   FSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTL 63
           FSDL L+  +LSA+ + G+ +PTPIQA AIP  LE RD  G AQTGTGKTA+F LP+L  
Sbjct: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87

Query: 64  LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHK-LNVALLIGGVSFEDQDRKLER 122
           L   + +   P+ +++ PTRELA QVA   +  G+N K L V  + GG S  DQ R L+ 
Sbjct: 88  LNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS 144

Query: 123 GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTL 182
           GA +++ TPGR+ D   R +L +      ++DEAD ML MGF+ D+  I +  P + Q +
Sbjct: 145 GAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRV 204

Query: 183 FFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRA 242
            FSATMPP ++++ +RFL+NP  ++VA  + T   V Q+      K  EK   +  L+  
Sbjct: 205 LFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVV--KGVEKDEAMARLLET 262

Query: 243 EEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLV 302
           EE +   +I+F   ++D   L   L   GF   ALHGD+ Q  R   + + + G + +LV
Sbjct: 263 EETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320

Query: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAI 362
           A+DV ARGLD+P ++HV+N+D+P   E Y+HRIGRTGRAGR GKA  LV  +  + L  I
Sbjct: 321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380

Query: 363 EKLIAEKIEWLSGDLSSLPAPMESFESNSGRRGTKERSGRGRDRNRRDAPASPVENINQD 422
           E++    +E +      LP   +  ES   + G  +     ++ +  +  A  VE + Q 
Sbjct: 381 ERVTRSSMEEI-----QLPHRDKVAESRLTKLG--QELAADKEFSSLERFADLVEKL-QA 432

Query: 423 AQSVVDTDIAAHGEDKVKAERRPEKTPRNSERNSRNLNSLHANDDNRDRRRHYRDHDDGP 482
           +  +  T +AA     +  +R+  K P         + ++      R  RR  R   D P
Sbjct: 433 SLEIDATTLAA-----ILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRP 487

Query: 483 TPVGFG 488
               FG
Sbjct: 488 ARREFG 493