Pairwise Alignments

Query, 503 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score =  315 bits (806), Expect = 3e-90
 Identities = 175/363 (48%), Positives = 235/363 (64%), Gaps = 5/363 (1%)

Query: 4   FSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTL 63
           F+ LGLS  +L AI + GY TP+PIQ  AIP  L  +D+   AQTGTGKTA F LP+L L
Sbjct: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query: 64  LEKG-RARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLER 122
           L KG + RA   R LIL PTRELAAQ+ +N   YG++  L  A++ GGV    Q +++ +
Sbjct: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122

Query: 123 GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTL 182
           GAD+L+ TPGRL+D   +  +    +EILV+DEADRMLDMGFI DI +I K++P  RQ L
Sbjct: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182

Query: 183 FFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRA 242
            FSAT   EI++LA   + NP  I V+  +STA+TV Q I  A  K  +K  +L  LV+ 
Sbjct: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVK--KKPDMLVKLVK- 239

Query: 243 EEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLV 302
            E   +  ++F   K     L   L+  G +  A+HG+  Q +RT  L +F+ G++ +LV
Sbjct: 240 -EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298

Query: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAI 362
           A+D+AARG+DIP +  V NF++P  AEDYVHRIGRTGRAG  GKA +LV+  +A  L AI
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358

Query: 363 EKL 365
           E+L
Sbjct: 359 ERL 361