Pairwise Alignments

Query, 402 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score = 65.1 bits (157), Expect = 4e-15
 Identities = 96/434 (22%), Positives = 173/434 (39%), Gaps = 64/434 (14%)

Query: 7   RLALRAISRNLLRSFLTVLGVVIGVAAVIAMVTIGNGTTEQVKSELSRLGTNMLFVRPGQ 66
           RLA   + RN  RS L++  + I V A+ +    G  T + ++   +R   ++   + G 
Sbjct: 10  RLAALNLQRNRRRSLLSISIIAIAVLALTSAGGFGLYTYDSLRESTARDVGHLTLSQRGY 69

Query: 67  FGPGRASTEAKRFDDRD-VEAIRNQISGIRAVAPQNRSSAATVIFGGKNHQTSVIGTTND 125
           F     +  A   +  D +  +      IR + P+   +         N Q S I     
Sbjct: 70  FAQEEETPLANGLEGSDHIRQVLLANPAIRGIQPRIELTGLV-----SNGQKSTI----- 119

Query: 126 YLIAQDWTIALGRDFQPAEDRGGQIGCIIGETVRQELFGAENPVGQTIRVSNISCPVIGV 185
                   + LG D +  + +G  +    G+T++       +P    +        ++GV
Sbjct: 120 -------FVGLGVDDKEFDMKGPFLDLRAGQTLQDPKSPRFDPTQPQV--------MLGV 164

Query: 186 -LARKGQSGLGD------DQDDTIIMPLKIHQRRIGGT-------TTISSIMVSAQDGVS 231
            LAR    G+GD         D  +  L    R +  T         +   + SAQ+ ++
Sbjct: 165 DLARNLSVGVGDWVTLLATTADGALNALDFQVRGLYSTGVPELDKRQLYLHLASAQELLN 224

Query: 232 TAKVQS---------DLQNLLR--ERRRINIGREDDFTVNDMTQIASAMTGTTTLLTGLL 280
           ++KV +         + Q L    E +   +    +  V    Q+A   T    L   L 
Sbjct: 225 SSKVSTLSVYLFNTENTQTLQTWVENQLNQLSLSQELQVTPWQQLAFFYTRVKDLYDRLF 284

Query: 281 GAVAAVSLLVGGIGIMNIMLVSVTERTREIGIRLAIGALEKQVLTQFLVEAVMLSAFGGI 340
           G +  V  +V  + + N + +SV+ERTREIG   A+GA    +L  F+ EA +L+  G +
Sbjct: 285 GVMGTVMAMVVFVALFNTLTMSVSERTREIGTLSALGAYPSDILAGFVREATLLALCGSL 344

Query: 341 VG-ILTGLGLAYSVVSFLNVPFVTS-----PSIIFLAFAF-------SAAIGVIFGYFPA 387
           +G +LTG+ +    V+ + +P         P  ++ +F         +  I V+  +F A
Sbjct: 345 LGTLLTGITIVAVRVADIQMPPPPGRTEGYPLDLYFSFTLVGFCTLGTVLICVLAAWFSA 404

Query: 388 RRAASLSPIEALRH 401
           R+  +    EAL +
Sbjct: 405 RKGVNKPITEALAY 418