Pairwise Alignments

Query, 402 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (263), Expect = 2e-27
 Identities = 94/431 (21%), Positives = 177/431 (41%), Gaps = 45/431 (10%)

Query: 7   RLALRAISRNLLRSFLTVLGVVIGVAAVIAMVTIGNGTTEQVKSELSRLGTNMLFVRPGQ 66
           R  ++ ++   LR  LT+L V      +  ++ +G G    +   +     N++ V  G 
Sbjct: 5   RQIMQEMAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGGY 64

Query: 67  FGPGRASTEAKRFDDRDVEAIRNQISGIRAVAPQNRSSAAT------VIFGGKNHQTSVI 120
                A+    RF +    ++  Q S + A  P  + +  +      + F  K       
Sbjct: 65  -----ATQTHGRFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWMMPY 119

Query: 121 GTTNDYLIAQDWTIALG-RDFQPAEDRGGQIGCIIGETVRQELFGAE------------N 167
              ++Y       +  G R F P ++   +   ++G  +  +LF  +            +
Sbjct: 120 AVKSEYQAMNKLRLLPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWFSGGELEQD 179

Query: 168 PVGQTIRVSNISCPVIGVLARK-GQSGLGDDQDDTIIMPLKIHQRRIGGTTTISSIMVSA 226
           PVGQ  ++      VIGVLA+  G    G   D +   P    QR       IS I +  
Sbjct: 180 PVGQIAKIGAHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFSTWQR-FHPNQAISGINLEP 238

Query: 227 QDGVSTAKVQSDLQNLLRERRRINIGREDDFTVNDMTQIASAMTGTTTLLTGLLGAVAAV 286
           + G     + + +Q +L+ +   ++  +    V D      +M      L   LG +  +
Sbjct: 239 RVGSDRQALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFI 298

Query: 287 SLLVGGIGIMNIMLVSVTERTREIGIRLAIGALEKQVLTQFLVEAVMLSAFGGIVGILTG 346
           +L V  +GI N+M  +V   TR+IG+R+A+GA    +   +L ++++    GGI     G
Sbjct: 299 TLAVASLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMGGI----AG 354

Query: 347 LGLAYSVVSFL-NVPFVTSP--------------SIIFLAFAFSAAIGVIFGYFPARRAA 391
           LG+ +++V  L  +P   +P              S+I +       +G++  + PA  AA
Sbjct: 355 LGVTFAMVRLLAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAA 414

Query: 392 SLSPIEALRHE 402
            ++P++AL+ E
Sbjct: 415 KVTPLQALQSE 425