Pairwise Alignments

Query, 402 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 404 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  110 bits (276), Expect = 6e-29
 Identities = 104/405 (25%), Positives = 184/405 (45%), Gaps = 44/405 (10%)

Query: 18  LRSFLTVLGVVIGVAAVIAMVTIGNGTTEQVKSELSRLGTNMLFVRPGQFGPGRASTEAK 77
           L+S L +  +  GV +V+ ++ +G G           L      V  GQ         A+
Sbjct: 17  LKSVLAITAISWGVISVVILMALGEGFYRAQTESFRFLLQETQMVASGQTSEVWQGMPAR 76

Query: 78  RFDDRDVEAIRNQISGIRAVAPQNRSSAATVIFGGKNHQTSVI------------GTTND 125
           R        I+   S +R VA +      ++++  +N + S+             G    
Sbjct: 77  R-------PIQLTESLMREVAQRPEIQRYSIVY--ENREVSITQQRGTAIGSMVSGVDRG 127

Query: 126 YLIAQDWTIALG-RDFQPAEDRGGQIGCIIGETVRQELFGAENPVGQTIRVSNISCPVIG 184
           Y       + LG RDF   +    +   I+G+ V      ++  +G   ++  I+  VIG
Sbjct: 128 YFSLAGLKLTLGSRDFSLHDQHNHRRVAILGDHVAAT---SQLKIGDEFKIRGIAFRVIG 184

Query: 185 VLA-RKGQSGLGDDQDDTIIMPLKIHQRRIGGTTTISSIMVSAQDGVSTAKVQSDLQNLL 243
           ++     +   GD+Q   + +P     + I  T     +++ AQ GVS+  ++  L++  
Sbjct: 185 IMDDESSRFSFGDNQK--VFIPSSTF-KDIWDTQPNMMLVLPAQ-GVSSWALREQLRHTF 240

Query: 244 RERRRINIGREDDFTVNDMTQIASAMTGTTTLLTGLLGAVAAVSLLVGGIGIMNIMLVSV 303
            +R   +   ++   + D     + +T     +   L A   +++ VG +G+ N+M ++V
Sbjct: 241 AQRLHFSPEDQEAVFLPDFGSGVAVITAILRGIQAFLAASGMMTMAVGILGVANMMFLAV 300

Query: 304 TERTREIGIRLAIGALEKQVLTQFLVEAVMLSAFGGIVGILTGLGLAYSVVSFLN----- 358
           TERTREIG+RLAIGA  +++  QFL+E ++L   G +VG+L    LAY  V  LN     
Sbjct: 301 TERTREIGVRLAIGATPQRIQQQFLLEGLLLVVIGALVGLL----LAYFGVLLLNHLGLP 356

Query: 359 ----VPFVTSPSIIFLAFAFSAAIGVIFGYFPARRAASLSPIEAL 399
                P +TS + ++L+   ++ + +   YFPARRAA L P+ AL
Sbjct: 357 TWLGEPVITS-TTVWLSMLVTSILALAAAYFPARRAAQLEPVIAL 400