Pairwise Alignments

Query, 402 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score =  167 bits (423), Expect = 5e-46
 Identities = 116/405 (28%), Positives = 209/405 (51%), Gaps = 32/405 (7%)

Query: 11  RAISRNLLRSFLTVLGVVIGVAAVIAMVTIGNGTTEQVKSELSRLGTNMLFVRPGQFGPG 70
           R I++   +SFLT++GVVIG+ A+++++++G G    + SE++ +G N++ V P Q   G
Sbjct: 12  RNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVISVLPSQNFGG 71

Query: 71  RASTEAKRFDDRDVEAIRNQISGIRAVAPQNRSSAATVIFGGKNHQTSVI---GTTNDYL 127
            A +  K F+D DV A+RN + G+  V      S   + +  ++H  +V+    +   ++
Sbjct: 72  PAVS--KNFNDNDVSAVRN-VRGVEEVVAAWFGSYE-LEYRDQSHYGNVLVIEPSKFTHV 127

Query: 128 IAQDWTIALGRDFQPAEDR----GGQIGCIIGETVRQELFGAENPVGQTIRVSNISCPVI 183
            ++ W       ++P + R      +  C+IG  +    F  E  +G  I +++    VI
Sbjct: 128 YSKTW------GYEPYKGRWIEDSDKYSCMIGYALATNSFDREIDIGDKITINDKKYKVI 181

Query: 184 GVLARKGQSGLGDDQDDTIIMPLKIHQRRIGGTTTISSIMVSAQDGVSTAKVQSDLQNLL 243
           G+L   G        ++++I+   + +         + ++VS + G     V  ++++ L
Sbjct: 182 GILEETGNPRT----ENSVILSKDVGEELFEINNEYNMMIVSVRSGEDVNLVSEEIKDEL 237

Query: 244 RERRRINIGREDDFTVNDMTQIASAMTGTTTLLTGLLGAVAAVSLLVGGIGIMNIMLVSV 303
            + R      +++F+V    Q+A ++     +LT  L  VA +SLLVG +GI N M +S+
Sbjct: 238 EDSRG-----DENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISNTMHMSI 292

Query: 304 TERTREIGIRLAIGALEKQVLTQFLVEAVMLSAFGGIVGILTGLGLAYSVVSFLNVPFV- 362
            ER ++IGI  A+GA    +L+ F+VEA  L  FGGIVG + G+ +A ++     +    
Sbjct: 293 LERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIAAISGYG 352

Query: 363 -----TSPSIIFLAFAFSAAIGVIFGYFPARRAASLSPIEALRHE 402
                 S  +I     FS  +G++ GYFPAR  A L+P++ LR E
Sbjct: 353 LIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397