Pairwise Alignments

Query, 402 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 399 a.a., ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 74.7 bits (182), Expect = 4e-18
 Identities = 78/348 (22%), Positives = 158/348 (45%), Gaps = 38/348 (10%)

Query: 73  STEAKRFDDRDVEAIRNQISGIRAVAPQNRSSAATVIFGG--------------KNHQTS 118
           ST+    D RD+E +R  I G+  VAP   SS A +  GG                  T 
Sbjct: 68  STDLVAQDKRDLELLR-AIPGVIDVAP---SSMAPLSGGGWSSNFTLGPEERAKSTPNTG 123

Query: 119 VIGTTNDYLIAQDWTIALGRDFQPAE------DRGGQIGCIIGETVRQELFGAENPVGQT 172
           +  +   ++ +    +  GR+F P E      + GG++  I+ +    +++  ++ +G++
Sbjct: 124 MYMSDEHFIDSLGLKLVEGRNFYPQEITTELLEDGGKM--IVTKAFVDKVWPNDSALGKS 181

Query: 173 IRVSNISCPVIGVLARKGQSGLGDDQDDTIIMPLKIHQRRIGGTTTISSIMVSAQDGVST 232
           + + +    VIGV+ R  Q+   D+ +      L ++             +V A+     
Sbjct: 182 VYMGSQHYVVIGVVERL-QTAWVDNSNVEYSSVLSVNY-----PADYKRYLVRAKAS-DI 234

Query: 233 AKVQSDLQNLLRERRRINIGREDDFTVNDMTQIASAMTGTTTLLTGLLGAVAAVSLLVGG 292
           A+++  +  +L +     +   + FT     +I +       L+  +L  +  + LL+  
Sbjct: 235 ARLKEVIPEVLHKEYPSRV--IEGFTTISERRIEAYRDHE--LMATVLTMMVVLLLLITS 290

Query: 293 IGIMNIMLVSVTERTREIGIRLAIGALEKQVLTQFLVEAVMLSAFGGIVGILTGLGLAYS 352
           +G+  +++ ++  RT++IG R A+GA ++ +++ FLVE  +L   GG +G+L  + L   
Sbjct: 291 LGVTGMVMFNIQRRTKQIGTRRALGAKKRDIISYFLVENYLLCLLGGTLGVLLAIQLGQQ 350

Query: 353 VVSFLNVPFVTSPSIIFLAFAFSAAIGVIFGYFPARRAASLSPIEALR 400
           ++S  ++P +     +F        +  +  Y PAR+AA +SP  A R
Sbjct: 351 LMSLYSLPMLALSYPLFTVVGL-FVVTTLAVYLPARKAAKISPATATR 397