Pairwise Alignments

Query, 432 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 91.3 bits (225), Expect = 5e-23
 Identities = 79/325 (24%), Positives = 140/325 (43%), Gaps = 43/325 (13%)

Query: 32  KSRRFLYIAAAIVLIGGGLGY--YYQSRAAGVAYN-------YTTEPARQGDLSVIVTST 82
           K   F  +  AI+L G  +G+  + Q + A    N        T   A   D   ++ + 
Sbjct: 2   KKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAI 61

Query: 83  GSVQPTDQVDISSELSGTVRKVNVTYNTPVKSGDILAELDTNKLEADVQSARAKLASAKA 142
           G ++P   V +++E +G + ++     T V     L  LD+    A+++S  A+L +AKA
Sbjct: 62  GFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKA 121

Query: 143 NVLKARADLGSAKTSMERLRSLVQSRVSSQQDLDAAQFTHDAAAATLQVNEATVLSAEAD 202
                           ER + L      S++  D A              EA+  +  AD
Sbjct: 122 --------------KYERYKGLFAKGSISKESYDEA--------------EASYYALSAD 153

Query: 203 LRLAEVNLGKAKIVSPIDGVILTRSVDPGATVASSLNAPVLFTIAGDLRHMELQVSVDEA 262
           +   +  + + +I +P  GVI  R+V  G  +    +   L     D   M L+ +V + 
Sbjct: 154 IESLKATIARREIKAPFAGVIGIRNVFLGQYLQPGTDIVRL----EDTSVMRLRFTVPQR 209

Query: 263 DVGKVETGQKATFNVDAYPDRSFPAEIETVRFASETVSNVVTYKGILTVDNAELLLRPGM 322
           D+ ++   Q+    VDAYP  SF   I  +  A    S ++  +    + N++  LR GM
Sbjct: 210 DISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQA--DIPNSDGKLRSGM 267

Query: 323 TATANIIVEEIKDTLLVPNSALRYT 347
            A ANII+ ++++ + +P +A+ YT
Sbjct: 268 FARANIILPKLENQVTLPQTAITYT 292