Pairwise Alignments

Query, 432 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 411 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  132 bits (332), Expect = 2e-35
 Identities = 100/354 (28%), Positives = 162/354 (45%), Gaps = 41/354 (11%)

Query: 33  SRRFLYIAAAIVLIGGGLGYY-YQSRAAGVAYNYTTEPARQGDLSVIVTSTGSVQPT--D 89
           +RR +Y   A++L    +G + Y  R         T    +G++   + +TG ++P    
Sbjct: 2   TRRRMYAILALILCSIAVGVWLYARRGTADPVIRETATVTRGEVRKTLEATGIIKPQVGA 61

Query: 90  QVDISSELSGTVRKVNVTYNTPVKSGDILAELDTNKLEADVQSARAKLASAKANVLK--- 146
            V   S  +G +RK++V     V+  +++AE+D  +  A +  A AKL  A+A   +   
Sbjct: 62  VVKTGSRFTGIIRKLHVKVGDRVEKDEVIAEIDDREQRAQLDEAEAKLRQAEAEAARVET 121

Query: 147 ---------------ARADLGSAKTSMERLRSLVQSRVSSQQDLDAAQFTHDAAAATLQV 191
                          ARA+   A  +MER R LV+  + ++  LD AQ    + +  L  
Sbjct: 122 SYPLQIREAEAQVQAARAESEYAALTMERKRKLVEQDLDARNSLDEAQQRSRSLSNVLVA 181

Query: 192 NEATV------------------LSAEADLRLAEVNLGKAKIVSPIDGVILTRSVDPGAT 233
            EAT+                    A+A L  A + L  A I SPI G++   +   G T
Sbjct: 182 REATLDRLRNEFRTERKRTRQAAEQAKAALETARIRLSYAVIRSPISGIVSQVTAPEGET 241

Query: 234 VASSLNAPVLFTIAGDLRHMELQVSVDEADVGKVETGQKATFNVDAYPDRSFPAEIETVR 293
           V +      L TI  D   +E+ + VDE DVG+V  G    F VD+ P+++F   ++ + 
Sbjct: 242 VVAGFQVVNLITIL-DPSRLEMWIYVDETDVGQVRPGLDVEFRVDSQPEKTFRGVVDQIY 300

Query: 294 FASETVSNVVTYKGILTVDNA-ELLLRPGMTATANIIVEEIKDTLLVPNSALRY 346
              E   N+V Y+ ++ +D A    LRP MT    IIV   KD L++PN A+++
Sbjct: 301 PQPEIRDNIVYYQALVRLDPATSEHLRPEMTTQCRIIVASKKDVLVIPNDAIKW 354