Pairwise Alignments

Query, 701 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  217 bits (553), Expect = 2e-60
 Identities = 150/445 (33%), Positives = 228/445 (51%), Gaps = 29/445 (6%)

Query: 235  LAGQLSLALVRQRLRKVAGQPIR--------------ARGDIAAKILSQLPFSLTASQSA 280
            +A Q   A +++RL  +AG  IR              A+  +  +  ++ P+  T  Q  
Sbjct: 573  VAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPVLAAQDGVYDEFAARFPYDETEDQLN 632

Query: 281  AVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVEAGGQAVLMAPTEILARQHFA 340
            ++  +  D+     M RL+ GDVG GKT VAL A   A   G Q  ++ PT +LARQHF 
Sbjct: 633  SIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVPTTLLARQHFK 692

Query: 341  TISKLAKAVGLTVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV 400
            T S   + + + ++  +     K+    ++ VA G+  IV+GTHAL   S+ + NL L +
Sbjct: 693  TFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEGKTDIVVGTHALLGSSIKFANLGLLI 752

Query: 401  VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQ 460
            +DE+  FGV  + RL       H+L ++ATPIPRTL LA  G  ++S +T  P  R  ++
Sbjct: 753  IDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVR 812

Query: 461  TVTIPTERIGDIVERLRAALKDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIG 520
            T   P + +  I E L      G +++++CP V     SDL   E    + S +    + 
Sbjct: 813  TFISPFDAL-VIRETLMREHYRGGQSFYVCPRV-----SDL--PEIHDFLKSDVPELKVA 864

Query: 521  LIHGRMNGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQL 580
            + HG+M   E +  M AF  G   +L++TT+VE G+DVP A  +++  A+ FGLAQL+QL
Sbjct: 865  VAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQL 924

Query: 581  RGRVGRGDEASTCI--LLYKGPLSENGRARLSILRDSED---GFLIAEEDLKLRGEGELL 635
            RGRVGR    +  +  L     L+     RL +L+  +    GF +A  DL +RG G LL
Sbjct: 925  RGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLL 984

Query: 636  GTRQSGTPGFRIASLEAHADLLEIA 660
            G  QSG    +    E +  +LE A
Sbjct: 985  GEEQSG--HIKEVGFELYQQMLEEA 1007