Pairwise Alignments

Query, 1165 a.a., transcription-repair coupling factor from Agrobacterium fabrum C58

Subject, 1234 a.a., Probable transcription-repair coupling factor Mfd (TRCF) from Mycobacterium tuberculosis H37Rv

 Score =  577 bits (1486), Expect = e-168
 Identities = 407/1141 (35%), Positives = 579/1141 (50%), Gaps = 105/1141 (9%)

Query: 23   PSGMEALLLADMARAGTSVAYVMSDGQRVADLEQILGFVAPDIPVLTLPAWDCLPYDRVS 82
            P+    L+ + +AR G  +  V + G+   DL   L  V  D   L LP+W+ LP++R+S
Sbjct: 45   PASARLLVASALARQGPLLV-VTATGREADDLAAELRGVFGDAVAL-LPSWETLPHERLS 102

Query: 83   PSADTSARRLAALAGLINHAKK---PHPAVVLVTVNAMLQKMAPR-DVIESLGFSARPGN 138
            P  DT   RL AL  L +       P   VV+ +V ++LQ M P+  ++E L  +   G+
Sbjct: 103  PGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTV--GD 160

Query: 139  QIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEPVRLDFFGDTLESIRT 198
            +   + + ARL    + RV  V   GEFAVRGGILD+F P  E PVR++F+GD +  +R 
Sbjct: 161  ESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRM 220

Query: 199  FDPASQRTIAQA--RSLDLNPMSEVTLTPDTIGRFRKNYLSLFGAATRDDALYQA----- 251
            F  A QR+I +    +L      E+ L+ D   R R   L+    A        A     
Sbjct: 221  FSVADQRSIPEIDIHTLVAFACRELLLSEDV--RARAAQLAARHPAAESTVTGSASDMLA 278

Query: 252  -VSEGRRYAGMEHWLPLFYEQLETAFDYLKGFRIVTDHTAKEAAKERSKLVLDYYEARRA 310
             ++EG    GME  LP+ +           G  ++TD    +       LV D  + R  
Sbjct: 279  KLAEGIAVDGMEAVLPVLWSD---------GHALLTD----QLPDGTPVLVCDPEKVRTR 325

Query: 311  SGETKGSTQGAPYKPVSPGQIYLDGKSFEAALASVNAVRLTPFNEHDSEGRPVATLD--- 367
            + +            +  G+ +L+     AAL +  A    P +     G     LD   
Sbjct: 326  AADL-----------IRTGREFLEASWSVAALGT--AENQAPVDVEQLGGSGFVELDQVR 372

Query: 368  ---AHVGPRW-----------------ARPPTEGDSEERVNVFDLAVKHIAERRAKGWKV 407
               A  G  W                 A P   G   +   +F +   HIA     G+  
Sbjct: 373  AAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRAHIA---TGGYAA 429

Query: 408  LITGWSEGSLDRLLQVLNEHGLEKIKPVTSLKEVKKLGKGEAACAVLSLEAG--FETGTL 465
            L+   + G+  R+++ L+E       P   L   +    G        L  G       L
Sbjct: 430  LVAPGT-GTAHRVVERLSESDT----PAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANL 484

Query: 466  AVIGEQDILGDRM-VRRSKRRKRGADFIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAG 524
             VI E D+ G R+     KR       I +   L  G LVVH +HGIGRFV +      G
Sbjct: 485  VVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGG 544

Query: 525  APRACLELHYA---------DDAKLFLPVENIDLLSRYGSDAAEATLDKLGGGAWQMRKA 575
            A R  L L YA         +  KL++P++++D LSRY    A A L +LGG  W   K 
Sbjct: 545  ARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPA-LSRLGGSDWANTKT 603

Query: 576  KLKKRLLDMADELIRIAAARLVRHAPALIAPDGLYDEFAARFPYDETEDQLNAIEAVRDD 635
            K ++ + ++A EL+ + A R      A         E    F + ET DQL AIE V+ D
Sbjct: 604  KARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKAD 663

Query: 636  LGAGRPMDRLICGDVGFGKTEVALRAAFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRG 695
            +    PMDR+ICGDVG+GKTE+A+RAAF A  +G QVAV+VPTTLLA QH +TF ER  G
Sbjct: 664  MEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSG 723

Query: 696  LPIRVQQASRLVGSKELALTKKEVAEGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFG 755
             P+ ++  SR   + E       +A+G  DIV+GTH LL  G+ + +LGL+++DEEQ FG
Sbjct: 724  FPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFG 783

Query: 756  VKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDP 815
            V+HKE +K L++ V VLT+SATPIPRTL++++ G+RE+S I TPP +R  V T++ P D 
Sbjct: 784  VEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD 843

Query: 816  LVIRETLMREHYRGGQSFYVCPRLADLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMN 875
              I   L RE  R GQ+FYV  R++ +    A ++  VPE +V VAHGQM    LE  + 
Sbjct: 844  KQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQ 903

Query: 876  AFYDGKYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFT 935
             F++ ++D+L+ TTIVE+GLD+  ANTLIV RAD FGL+QL+QLRGRVGRS+ R +A F 
Sbjct: 904  RFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFL 963

Query: 936  LPVNKVLTTMAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELY 995
             P    LT  A  RL  +   + LGAG  +A  DL+IRGAGN+LG EQSGH+  VGF+LY
Sbjct: 964  YPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLY 1023

Query: 996  QQMLEEAV-------------AEVKGDEEVRDSGWSPQISVGTSVMIPEDYVPDLHLRMG 1042
             +++ EA+               V+  EE +D     +I +     +P DY+    LR+ 
Sbjct: 1024 VRLVGEALETYRDAYRAAADGQTVRTAEEPKD----VRIDLPVDAHLPPDYIASDRLRLE 1079

Query: 1043 LYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKIVYIKSLCRTANVEKVDAGPKGV 1102
             YRRL   +   E+     E+ DR+G LP+  + L  +  ++ LCR + +  V A     
Sbjct: 1080 GYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAAT 1139

Query: 1103 V 1103
            V
Sbjct: 1140 V 1140