Pairwise Alignments

Query, 1165 a.a., transcription-repair coupling factor from Agrobacterium fabrum C58

Subject, 1160 a.a., transcription-repair coupling factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  624 bits (1609), Expect = 0.0
 Identities = 422/1131 (37%), Positives = 608/1131 (53%), Gaps = 73/1131 (6%)

Query: 37   AGTSVAYVMSDGQRVADLEQILGFVAPDIPV----LTLPAWDC----LPYDRVSP-SADT 87
            AG S   V+ D + +A    +L   +PD       L  P W+     +P   +   + D 
Sbjct: 39   AGRSAVMVVRDAEELALARGLLTLFSPDASAGDSPLVKPRWESRWVVMPQHPLGARNRDA 98

Query: 88   SARRLAALAGLINHAKKPHPAVVLVTVNAMLQKMAPRDVIESLGFSARPGNQIRMEDIAA 147
             A R+AAL  L    +K  P  VL+TV+  L K+ P D+  S   +   G+++  E +  
Sbjct: 99   WASRMAALFAL---GQKRVPQGVLITVDNFLSKLPPADLFASHELTLACGDEMAPELVLE 155

Query: 148  RLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEPVRLDFFGDTLESIRTFDPASQRTI 207
            +    GFDRV  V   GE AVRG I+D++ PG E P+RL+FFG+TLE IR FD ++QR++
Sbjct: 156  QAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGETLEEIRLFDASNQRSL 215

Query: 208  AQARSLDLNPMSEVTLTPDTIGRFRKNYLSLFGAATRDDALYQAVSEGRRYAGMEHWLPL 267
             +   + L P+S V L+ +   +    +  LF      +  Y  +  G    G E  +P 
Sbjct: 216  GKLDEMVLLPVSPVVLSAELRSKATARWKRLFSKGMLTEEQYAGLLRGIERHG-EGLMPG 274

Query: 268  FYEQLETAFDYLKGFRIVTDHTAKEAA---KERSKLVLDYYEARRASGET---KGSTQGA 321
             Y +  T         +V +   ++AA     R +LV D  EA + + E    K + +G 
Sbjct: 275  AYYEAPT---------VVEEWLPRDAAWILPGRKELV-DAVEAAQQNWEALFDKQAEEGG 324

Query: 322  PYKPVSPGQIYLDGKSFEAALASVNAVRLTPFNEHDSEGRPVATLDAHVGPRWARPPTEG 381
              +P   G +  D        A V  +    + E DS G     +            T  
Sbjct: 325  ARQP--RGLVLRDA-------APVRQL----YEEKDSAGFEPLVMGVE--------RTGV 363

Query: 382  DSEERVNVFDLAVKHIAERRAKGWKVLITGWSEGSLDRLLQVL---NEHGLEKIKPVTSL 438
            D  ER     + +    + R + W+ L+ G           +L   NE G  K   +   
Sbjct: 364  DMPERKLHGFVDLFPAPDARDRPWQALVAGLHRFVATHARVLLCFGNERGRRKFLKLAEQ 423

Query: 439  KEVKKL----GKGEAACAVLS-LEAGFET---GTLAVIGEQDILG---DRMVRRSKRRKR 487
              +        KG    AV++   AG E    GTL VIGE D+L    DR  R +    R
Sbjct: 424  DGITPTLRYDPKGRGLMAVVAPYRAGVELAWDGTL-VIGE-DVLQPKTDRSARVASGAFR 481

Query: 488  GADFIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKLFLPVENI 547
            G D   +  GL  G L+VH ++G+ RFVGL+ ++  G     L L YA D +L+LPV+ +
Sbjct: 482  GLD---KHEGLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDRL 538

Query: 548  DLLSRY-GSDAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHAPALIAP 606
             L+ R+ G+D  + +LD+LGGGAWQ  K K +K +  +A +L+ + A R +         
Sbjct: 539  SLVQRFKGADDTKPSLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPI 598

Query: 607  DGLYDEFAARFPYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLAA 666
              LY EF A F ++ET DQ  AI+ V +D+    PMDRL+CGDVGFGKTEVALRAAF AA
Sbjct: 599  GELYREFEASFGFEETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAA 658

Query: 667  MNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVAEGKTDI 726
              G QVA++ PTT+LA QH++TF  R  G P+ V   SR V  ++        A+G  DI
Sbjct: 659  SEGRQVALLCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDI 718

Query: 727  VVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLA 786
            ++GTH LL   +   NLGLL++DEEQ FGV+HKE+LK+ + +V  LTL+ATPIPRTLQL+
Sbjct: 719  LIGTHRLLSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLS 778

Query: 787  MTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLADLADIH 846
            M+G+RELS+I T P +R  V T +   D   ++  L RE  R GQ F+V  R+  L    
Sbjct: 779  MSGIRELSVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTT 838

Query: 847  AFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIVH 906
             +++  VP+ +V +AHGQM    LE+ M+ F+ G+ DVL+ T IVESGLD P ANTLIV 
Sbjct: 839  EYVRKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVD 898

Query: 907  RADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLGAGFQLA 966
            +A MFGL QLYQLRGRVGRS  +A+A+F +P    L+ +A  R++V+  +D LGAGFQ+A
Sbjct: 899  QAQMFGLGQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVA 958

Query: 967  SHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEEVRDSGWSPQISVGTS 1026
              DL IRGAGN+LGE QSGH+  VG EL+ +MLEEAV  +KGD   R+S    ++++G  
Sbjct: 959  MEDLRIRGAGNILGEAQSGHMTRVGLELFLEMLEEAVTRLKGDPP-RES-VETELNIGIP 1016

Query: 1027 VMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKIVYIKSL 1086
              IPE Y+ D   R+  Y+ L    D +       EM DR+G  P E++  L ++ +K  
Sbjct: 1017 AHIPEGYIEDARDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVLKRQ 1076

Query: 1087 CRTANVEKVDAGPKGV-VVQFRNKEFPNPAALVGYIGKQGSMAKIRPDHSL 1136
             R   V++ D  P  V +V    +   +   L+ ++G+    A+++P  +L
Sbjct: 1077 LRRMQVQRADIYPDKVRLVWDERQTAVDIGRLIEWVGQHADRARLQPPATL 1127