Pairwise Alignments

Query, 1165 a.a., transcription-repair coupling factor from Agrobacterium fabrum C58

Subject, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

 Score =  665 bits (1717), Expect = 0.0
 Identities = 406/1116 (36%), Positives = 610/1116 (54%), Gaps = 53/1116 (4%)

Query: 18   TIGNVPSGMEALLLADMARAGTS----VAYVMSDGQRVADLEQILGFVAPDIPVLTLPAW 73
            T+  +P   +AL LA  A         +A V ++      L + + + AP + V  LP W
Sbjct: 23   TVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFAPSLRVRLLPDW 82

Query: 74   DCLPYDRVSPSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQKMAPRDVIESLGFS 133
            + LPYD  SP  D  + RLA L  +    +     ++LV     L ++AP   + +  F 
Sbjct: 83   ETLPYDSFSPHQDLVSERLATLHDI----QGGQCDIMLVPAQTALYRLAPPAFLAAYTFF 138

Query: 134  ARPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEPVRLDFFGDTL 193
             + G ++    + A+    G++ V+ V   GE++VRGG++D+F  G+  P R+D FG+ +
Sbjct: 139  FKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYRIDLFGNEI 198

Query: 194  ESIRTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRFRKNYLSLFGAATRDDALYQAVS 253
            E+IR FDP +QR++   + + L P  E  L       FR  +  LF        +Y+ + 
Sbjct: 199  ETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEGDPSKSTIYKDIG 258

Query: 254  EGRRYAGMEHWLPLFYEQLETAFDYLKG-FRIVTDHTAKEAAKERSKLVLDYYEARRASG 312
             G   AG+E++LPLF+E   T FDYL    ++       +A +         Y   R   
Sbjct: 259  NGVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWADTTQRYNFMRHDR 318

Query: 313  ETKGSTQGAPYKPVSPGQIYLDGKSFEAALASVNAVRLTPFNEHDSEGRPVATLDAHVGP 372
            E        P  P  P  ++L  + F      +  + L      D+     +  D  V  
Sbjct: 319  ER-------PLLP--PAALFLSEEQFFTGAKPLARLVLQGTATGDTVPLAESLPDVSVNR 369

Query: 373  RWARPPTEGDSEERVNVFDLAVKHIAERRAKGWKVLITGWSEGSLDRLLQVLNEHGLEKI 432
            R   P         VN+  L +K       K  +VL+   S G  + LLQ+  E GL   
Sbjct: 370  RAEDP--------LVNLEALLLK-------KDRRVLMCADSAGRRETLLQLFGESGLRP- 413

Query: 433  KPVTSLKEVKKLGKGEAACAVLSLEAGFETGT------LAVIGEQDILGDRMVRRSKRRK 486
            +P+         G    +  V  L++GF   +      LA + E ++      R  +R++
Sbjct: 414  QPIDDYAAFLA-GDSHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQ 472

Query: 487  RGAD----FIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKLFL 542
              A      + ++A L  G  VVH+EHGIGR+ GL +++        L L Y   +KL++
Sbjct: 473  EQASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLYV 532

Query: 543  PVENIDLLSRY-GSDAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHAP 601
            PV  + ++SRY G+D   A L  LG G W   K +  +++ D A EL+ + A R +R   
Sbjct: 533  PVHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGH 592

Query: 602  ALIAPDGLYDEFAARFPYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGFGKTEVALRA 661
            A       Y++FA  F ++ET DQ  AI AV  D+ +G+PMDRL+CGDVGFGKTEVALRA
Sbjct: 593  AFELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRA 652

Query: 662  AFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVAE 721
            AF+A M G QVA++ PTTLLA QHF+  S+RF   P+R+ + SR    KE+    K++ +
Sbjct: 653  AFVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQIND 712

Query: 722  GKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPR 781
            G  DIV+GTH +L   + F  LGL++IDEE  FGV+ KE LK L+++V VLTL+ATPIPR
Sbjct: 713  GTADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPR 772

Query: 782  TLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLAD 841
            TL +A+ G+R+ S+I T P  R+A++TF+   +  V+RE ++RE  RGGQ +++   +  
Sbjct: 773  TLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEVDT 832

Query: 842  LADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTAN 901
            + +  A L   VPE ++AVAHGQM   ELE +M  F   + ++LL TTI+E+G+DVPTAN
Sbjct: 833  IENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTAN 892

Query: 902  TLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLGA 961
            T+++HRAD FGLAQL+QLRGRVGRS  +A+A   +   + L+ +A+RRL+ +Q ++ LG+
Sbjct: 893  TILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGS 952

Query: 962  GFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEE---VRDSGWS 1018
            GF LA HDL+IRGAG +LG++QSG I E+GF+LY  ML  AV  +K  +E   +     +
Sbjct: 953  GFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAVT 1012

Query: 1019 PQISVGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLL 1078
             +I++GT  ++P DY  D+H R+ LY+RL        +D    E+IDRFG LP + Q L+
Sbjct: 1013 TEINLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQALI 1072

Query: 1079 KIVYIKSLCRTANVEKVDAGPKGVVVQFRNKEFPNP 1114
            +   ++       V K+DA    + +QF     PNP
Sbjct: 1073 ETHRLRIAAVPLGVRKIDASDAAISMQF----LPNP 1104