Pairwise Alignments

Query, 577 a.a., ABC transporter, nucleotide binding/ATPase protein from Agrobacterium fabrum C58

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  313 bits (802), Expect = 1e-89
 Identities = 199/572 (34%), Positives = 299/572 (52%), Gaps = 10/572 (1%)

Query: 3   RRFFAYYRPYRGLFILDFSCAVLSGVLELGFPMAVKAFVDVLLPGGQWG---IILAASVG 59
           +R + Y R Y+   ++     V++   +      +K  +D      +     I+    +G
Sbjct: 14  KRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILG 73

Query: 60  LLVIYVLNTGLMATVTYWGHMLGINIETDMRRLAFDHLQKLSFRYFDNQKTGHLVGRLTK 119
           L+ +  L+    +    W   +  N+   MRR  F+H   +  R+FD + TG L+ R+T 
Sbjct: 74  LMFVRGLSGFASSYCLSW---VSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITY 130

Query: 120 DLEEIGEVAHHGPEDLFIAIMTFIGAFLLMMSVNVQLALVTAAVVPVTAWVTSRYGGRMT 179
           D E++          +     + IG   LM   + QL+LV   V PV A+  S    R  
Sbjct: 131 DSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFR 190

Query: 180 QNFRALYGRVGDFNARIEENVGGMRVVQAFANEDHERSLFEKDNQKYRRTKLDAYKIMAA 239
           +  R +   +G   +  E+ + G +VV ++  ++ ER  F+K +   R+  +      + 
Sbjct: 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSI 250

Query: 240 STSLSYMSMRLTQMIVMICGAWFVLNGSLTEGGFVGFLLLVGVFFRPVEKINSVIETYPK 299
           +  +  M   L    V+   +   +   LT G F      +    RP++ + SV   + +
Sbjct: 251 ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQR 310

Query: 300 GIAGFRRFTELLDTAPDIVDAPDAIDAPALSGAIEYRHVGFGY-AEGKRVLDNIDLKISA 358
           G+A  +    L+D   +  +     +A  ++G ++ + V F Y  + K  L ++   I  
Sbjct: 311 GMAACQTLFGLMDLETERDNGK--YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQ 368

Query: 359 GETVAFVGPSGAGKTTLCSLLPRFYDVTSGSITIDGIDIRKMKLASLRNQIGIVQQDVFL 418
           G+TVA VG SG+GK+T+ +L  RFYDV SGSI +DG D+R  KL +LR    +V Q+V L
Sbjct: 369 GKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHL 428

Query: 419 FGGTIRENIEYGRLGA-SDEEIMDAARRARLDGVIEAMPLGLDTVIGERGVKLSGGQKQR 477
           F  TI  NI Y   G  + E+I  AAR+A     IE MP GLDTVIGE G  LSGGQ+QR
Sbjct: 429 FNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQR 488

Query: 478 LAIARMFLKNPPILILDEATSALDTETERAIQQSLTELAKGRTTLVIAHRLATIRDASRI 537
           +AIAR  L++ P+LILDEATSALDTE+ERAIQ +L EL K +T LVIAHRL+TI  A  I
Sbjct: 489 VAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEI 548

Query: 538 VVVDQTGIAETGAHAELLAAKGHYSRLHEAQF 569
           +VVD+  I E G HA+LLA  G Y++LH  QF
Sbjct: 549 LVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580