Pairwise Alignments

Query, 1272 a.a., ribonucleoside-diphosphate reductase 2 alpha chain from Agrobacterium fabrum C58

Subject, 907 a.a., vitamin B12-dependent ribonucleotide reductase from Caulobacter crescentus NA1000

 Score =  333 bits (855), Expect = 3e-95
 Identities = 243/695 (34%), Positives = 341/695 (49%), Gaps = 100/695 (14%)

Query: 490  ASLNLLQFKDAKTKRIDIADYEHAVRLWTVVLEVSVMMAQFPSRQIAERSYEYRTLGLGY 549
            A+++   F DA+    DI  +     LW   LE+     + P+R             L  
Sbjct: 263  AAIDASTFLDAEG--FDIERFTFVCHLWATALELD--RGERPAR-------------LSL 305

Query: 550  ANIGGLLMSSGIPYDSDEGRAIAGALTAIMTGVSYATSAEMAGELGPFPSFAPNRDNMLR 609
            A +G  L+S G    S EGR  A AL A+  G + + SAE A  LG  P+F  +R  +L+
Sbjct: 306  AGVGDCLLSQGYAQTSIEGRDGAAALWALAVGAALSASAEAAATLGQDPAFDQDRQGVLK 365

Query: 610  VIRNHRRAAHGQSEGYEGLSVNPVALIHADCTDQDLVAHATAAWDKALELGEKHGYRNAQ 669
             +   R                    + A      L   A AA   A  L  KHG R+A 
Sbjct: 366  TLAERR--------------------VRAAALRSALATEAAAALATAHALARKHGLRSA- 404

Query: 670  TTVIAPTGTIGLVMDCDTT--------GIEPDFALVKFKKLAGGGYFKIINRAVPESLRS 721
                   G +G   D + T        G     A V   + A G      + A  E+L S
Sbjct: 405  -------GLVGPFADLEATLRLGGSPVGAAGAMAPVSVSQTADGFLMPSFSAAAFEALSS 457

Query: 722  LGYSESQIAEIEAYAVGHGNLNQAPAINPSTLKAKGFTDEKIEAVNAALKSAFDIKFVFN 781
             G     +     +A+GHG+L ++PAI+ + L+A+GFT  +IE    AL+    ++  F 
Sbjct: 458  EGVD---LDAARRHALGHGSLAESPAIDHAMLQARGFTAHEIEKAENALREHQGVRAAFA 514

Query: 782  QWTLGADFLKGTLKVSDEQLSDMSFNLLDHLGFAKKDIEAANVHVCGAMTLEGAPFLKNE 841
               +GA FL+  L  S E ++   F+ L    F+  +I AA  H  GA TL         
Sbjct: 515  PAIVGAGFLRDVLGASAEDVARRDFDTLAFADFSAAEIAAAERHALGAGTLG-------- 566

Query: 842  HLAVFDCANPCGKIGKRYLSVES-----HIRMMAAAQPFISGAISKTINMPNDATVEDCG 896
                 DC      + + + SVE+      + M+AA + F     + T+++P+DA   D  
Sbjct: 567  -----DCEALNPDLREAFRSVEAPSFNDRLAMLAAVESFACLPTAVTVSIPHDARPADAV 621

Query: 897  AAYMLSWKLALKANALYRDGSKLSQPLNASLVEDEDDEDFVEELIQQPLAQQAVTITEKI 956
             A   + +  ++A  L R       P       D  +E   E    +P   +   +TE++
Sbjct: 622  RAQAAAARAGVRALRLQR------APTPYDFKLDLPEEPTAEA--PRPAPAREPLVTERV 673

Query: 957  VERVIERVSREREKLPNRRQGYTQKATVGGHKVYLRTGEFGDGRIGEIFIDMHKEGAAFR 1016
            VER++ER  R R +LP+RR+GY QKA VGGHKVYL TGE+ DG +GE+FIDMHKEGAAFR
Sbjct: 674  VERIVER-DRSRRRLPDRRKGYIQKAAVGGHKVYLHTGEYEDGELGELFIDMHKEGAAFR 732

Query: 1017 AMMNNFAIAISLGLQYGVPLEEYVEAFTFTKFEPAGMVQGNDAIKNATSILDYVFRELAV 1076
            ++MNNFAIA+SLGLQ+GVPL+E+V+AF +TKFEPAG V GND+IK+ATSILDY+FREL V
Sbjct: 733  SLMNNFAIAVSLGLQHGVPLDEFVDAFVYTKFEPAGPVTGNDSIKSATSILDYIFRELGV 792

Query: 1077 SYLGRHDLAHVDTSDFSNTALGKGIQEGKTNLL-------------STGWTRGYKP-TLV 1122
            SYLGR DLA+ D   F+   LG G +  + +LL             S G++RG  P  LV
Sbjct: 793  SYLGRDDLANGDPGQFNADGLGAGKRLAEDDLLDDEADPVPASRFISKGFSRGATPDNLV 852

Query: 1123 SSNEGDR---AASEPKGSATAAPARGSANVTSFAG 1154
             ++ G R    A  P       PA G  ++    G
Sbjct: 853  FASFGHRRVEGADRPGADGEMCPACGDLSLVRRGG 887



 Score = 39.3 bits (90), Expect = 2e-06
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 1174 FKRDYEERAKELAEEIAEEVIDEVVQEAQQTATALFSDKAAADAASAKAEAKKKENERRM 1233
            F  D     K LAE+   +++D+   EA     + F  K  +  A+           RR+
Sbjct: 808  FNADGLGAGKRLAED---DLLDD---EADPVPASRFISKGFSRGATPDNLVFASFGHRRV 861

Query: 1234 RSIAQ-GYTGNMCSECQNFTMVRNGTCEKCDTCGATS 1269
                + G  G MC  C + ++VR G    CDTCGA S
Sbjct: 862  EGADRPGADGEMCPACGDLSLVRRGGMTVCDTCGAQS 898



 Score = 31.2 bits (69), Expect = 4e-04
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 318 LKAIMKACVNCEADNGDCFDPAKNPALKREIRAAKKDMVPENYVKRVIQFAEQ 370
           L  +  A   C  D+  C D  KNPAL R  R A++    +  +   I  A+Q
Sbjct: 146 LDQVADAVRRCSGDSRACSDVRKNPALARAARKARELGADDQTILDAIALADQ 198