Pairwise Alignments

Query, 322 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 307 a.a., integral membrane domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.6 bits (179), Expect = 6e-18
 Identities = 54/200 (27%), Positives = 101/200 (50%), Gaps = 9/200 (4%)

Query: 83  AVLYLTALGLIEFSNASAILQSLPLVVTLGAALFLREPVGWRRWVAIIVGFIGVLVIIRP 142
           A+  +  L  +  +  S++  S PL++ L    FL+E +   + +  ++GF+G+L+I+RP
Sbjct: 79  ALFLIIGLMALPLATVSSLFYSAPLMIILMGYWFLKERITTGQVICTLLGFVGILIILRP 138

Query: 143 GPEGFTPGALLVVASLAVTAARDLLTRKMYADVPSLAITVITAFVNMAVG---GLLIVPF 199
               +     L V   A T A + LT K    VPS    V+T  +   +G    L+I  F
Sbjct: 139 SEMNWFG---LAVLFSAFTFAVNQLTLKK---VPSTEHPVLTLMLYNLLGIPATLVIAAF 192

Query: 200 GGWQPMNFTIVSHLAGSAILVLVGYQAIILSMRTGEISFVAPFRYTGLLWGFMIGVFFFN 259
            G + +++ ++     S   +L+ +   +L+ R  + S +A   YTGLL+   +G   F+
Sbjct: 193 QGLEGLSWELLVVALLSNAFLLIYHWLCVLAYRRAQASDIAIAEYTGLLFIVFLGWLLFD 252

Query: 260 EKIDSYTIIGAMIVIGSGLY 279
           E +DS + +GA +++   L+
Sbjct: 253 EWLDSLSWLGAALIVLPSLF 272